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Isheng Jason Tsai
Isheng Jason Tsai
Biodiversity research center, Academia Sinica
Verified email at gate.sinica.edu.tw - Homepage
Title
Cited by
Cited by
Year
Population genomics of domestic and wild yeasts
G Liti, DM Carter, AM Moses, J Warringer, L Parts, SA James, RP Davey, ...
Nature 458 (7236), 337-341, 2009
15092009
The genomes of four tapeworm species reveal adaptations to parasitism
IJ Tsai, M Zarowiecki, N Holroyd, A Garciarrubio, A Sanchez-Flores, ...
Nature 496 (7443), 57-63, 2013
6562013
A Systematically Improved High Quality Genome and Transcriptome of the Human Blood Fluke Schistosoma mansoni
AV Protasio, IJ Tsai, A Babbage, S Nichol, M Hunt, MA Aslett, N De Silva, ...
PLoS neglected tropical diseases 6 (1), e1455, 2012
4192012
Genomic Insights into the Origin of Parasitism in the Emerging Plant Pathogen Bursaphelenchus xylophilus
T Kikuchi, JA Cotton, JJ Dalzell, K Hasegawa, N Kanzaki, P McVeigh, ...
PLoS pathogens 7 (9), e1002219, 2011
3792011
Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps
IJ Tsai, TD Otto, M Berriman
Genome biology 11 (4), 1-9, 2010
3422010
Population genomics of the wild yeast Saccharomyces paradoxus: Quantifying the life cycle
IJ Tsai, D Bensasson, A Burt, V Koufopanou
Proceedings of the National Academy of Sciences 105 (12), 4957-4962, 2008
3192008
The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery
R Laing, T Kikuchi, A Martinelli, IJ Tsai, RN Beech, E Redman, N Holroyd, ...
Genome biology 14 (8), 1-16, 2013
2932013
Comparative genomics of the major parasitic worms
International Helminth Genomes Consortium
Nature genetics 51 (1), 163, 2019
2192019
A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
MT Swain, IJ Tsai, SA Assefa, C Newbold, M Berriman, TD Otto
Nature protocols 7 (7), 1260-1284, 2012
2132012
The genome and life-stage specific transcriptomes of Globodera pallidaelucidate key aspects of plant parasitism by a cyst nematode
JA Cotton, CJ Lilley, LM Jones, T Kikuchi, AJ Reid, P Thorpe, IJ Tsai, ...
Genome biology 15 (3), 1-17, 2014
2052014
The genomic basis of parasitism in the Strongyloides clade of nematodes
VL Hunt, IJ Tsai, A Coghlan, AJ Reid, N Holroyd, BJ Foth, A Tracey, ...
Nature genetics 48 (3), 299-307, 2016
1932016
Whipworm genome and dual-species transcriptome analyses provide molecular insights into an intimate host-parasite interaction
BJ Foth, IJ Tsai, AJ Reid, AJ Bancroft, S Nichol, A Tracey, N Holroyd, ...
Nature genetics 46 (7), 693-700, 2014
1372014
The genome of Onchocerca volvulus, agent of river blindness
JA Cotton, S Bennuru, A Grote, B Harsha, A Tracey, R Beech, SR Doyle, ...
Nature microbiology 2 (2), 1-12, 2016
902016
Conversion from mouse embryonic to extra-embryonic endoderm stem cells reveals distinct differentiation capacities of pluripotent stem cell states
LTY Cho, SE Wamaitha, IJ Tsai, J Artus, RI Sherwood, RA Pedersen, ...
Development, 2012
872012
Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution
SM Chaw, YC Liu, YW Wu, HY Wang, CYI Lin, CS Wu, HM Ke, LY Chang, ...
Nature plants 5 (1), 63-73, 2019
732019
Conservation of recombination hotspots in yeast
IJ Tsai, A Burt, V Koufopanou
Proceedings of the National Academy of Sciences 107 (17), 7847-7852, 2010
722010
Germline Transgenesis and Insertional Mutagenesis in Schistosoma mansoni Mediated by Murine Leukemia Virus
G Rinaldi, SE Eckert, IJ Tsai, S Suttiprapa, KJ Kines, JF Tort, VH Mann, ...
PLoS pathogens 8 (7), e1002820, 2012
652012
Inferring synteny between genome assemblies: a systematic evaluation
D Liu, M Hunt, IJ Tsai
BMC bioinformatics 19 (1), 1-13, 2018
642018
Biology and genome of a newly discovered sibling species of Caenorhabditis elegans
N Kanzaki, IJ Tsai, R Tanaka, VL Hunt, D Liu, K Tsuyama, Y Maeda, ...
Nature communications 9 (1), 1-12, 2018
582018
Predicting clinical outcomes of cirrhosis patients with hepatic encephalopathy from the fecal microbiome
CM Sung, Y Lin, KF Chen, H Ke, HY Huang, YN Gong, WS Tsai, JF You, ...
Cellular and molecular gastroenterology and hepatology 8 (2), 301-318. e2, 2019
482019
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