Ali Masoudi-Nejad, Ph.D.
Ali Masoudi-Nejad, Ph.D.
Associate Professor of Systems Biology and Bioinformatics
Verified email at ut.ac.ir - Homepage
TitleCited byYear
Kavosh: a new algorithm for finding network motifs
ZRM Kashani, H Ahrabian, E Elahi, A Nowzari-Dalini, ES Ansari, S Asadi, ...
BMC bioinformatics 10 (1), 318, 2009
1802009
Predictive genomics: a cancer hallmark network framework for predicting tumor clinical phenotypes using genome sequencing data
E Wang, N Zaman, S Mcgee, JS Milanese, A Masoudi-Nejad, ...
Seminars in cancer biology 30, 4-12, 2015
1652015
EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments
A Masoudi-Nejad, K Tonomura, S Kawashima, Y Moriya, M Suzuki, M Itoh, ...
Nucleic acids research 34 (suppl_2), W459-W462, 2006
1502006
Transfer of rye chromosome segments to wheat by a gametocidal system
A Masoudi-Nejad, S Nasuda, RA McIntosh, TR Endo
Chromosome research 10 (5), 349-357, 2002
1152002
MODA: an efficient algorithm for network motif discovery in biological networks
S Omidi, F Schreiber, A Masoudi-Nejad
Genes & genetic systems 84 (5), 385-395, 2009
1122009
Reconstruction of an integrated genome-scale co-expression network reveals key modules involved in lung adenocarcinoma
G Bidkhori, Z Narimani, SH Ashtiani, A Moeini, A Nowzari-Dalini, ...
PloS one 8 (7), e67552, 2013
892013
Computational prediction of protein–protein interaction networks: algorithms and resources
J Zahiri, J Hannon Bozorgmehr, A Masoudi-Nejad
Current genomics 14 (6), 397-414, 2013
862013
PPIevo: Protein–protein interaction prediction from PSSM based evolutionary information
J Zahiri, O Yaghoubi, M Mohammad-Noori, R Ebrahimpour, ...
Genomics 102 (4), 237-242, 2013
622013
Reconstruction of Arabidopsis thaliana fully integrated small RNA pathway
SA Jamalkandi, A Masoudi-Nejad
Functional & integrative genomics 9 (4), 419, 2009
502009
Alterations in cancer cell metabolism: the Warburg effect and metabolic adaptation
Y Asgari, Z Zabihinpour, A Salehzadeh-Yazdi, F Schreiber, ...
Genomics 105 (5-6), 275-281, 2015
482015
Building blocks of biological networks: a review on major network motif discovery algorithms
A Masoudi-Nejad, F Schreiber, ZRM Kashani
IET systems biology 6 (5), 164-174, 2012
482012
Molecular epidemiology of hepatitis C virus among injection drug users in Iran: a slight change in prevalence of HCV genotypes over time
K Samimi-Rad, MN Toosi, A Masoudi-nejad, A Najafi, R Rahimnia, ...
Archives of virology 157 (10), 1959-1965, 2012
472012
Emerging roles of epigenetic mechanisms in Parkinson’s disease
E Habibi, A Masoudi-Nejad, HM Abdolmaleky, SJ Haggarty
Functional & integrative genomics 11 (4), 523-537, 2011
452011
Controllability in cancer metabolic networks according to drug targets as driver nodes
Y Asgari, A Salehzadeh-Yazdi, F Schreiber, A Masoudi-Nejad
PloS one 8 (11), e79397, 2013
432013
Drug–target interaction prediction via chemogenomic space: learning-based methods
Z Mousavian, A Masoudi-Nejad
Expert opinion on drug metabolism & toxicology 10 (9), 1273-1287, 2014
392014
Modeling of tumor progression in NSCLC and intrinsic resistance to TKI in loss of PTEN expression
G Bidkhori, A Moeini, A Masoudi-Nejad
PloS one 7 (10), e48004, 2012
392012
Dissection of rye chromosome 1R in common wheat
M Tsuchida, T Fukushima, S Nasuda, A Masoudi-Nejad, G Ishikawa, ...
Genes & genetic systems 83 (1), 43-53, 2008
382008
Metabolic cancer biology: structural-based analysis of cancer as a metabolic disease, new sights and opportunities for disease treatment
A Masoudi-Nejad, Y Asgari
Seminars in cancer biology 30, 21-29, 2015
372015
Protein Clustering and Interactome Analysis in Parkinson and Alzheimer's Diseases.
M Rezaei-Tavirani, M Zamanian-Azodi, S Rajabi, A Masoudi-Nejad, ...
Archives of Iranian Medicine (AIM) 19 (2), 2016
362016
An alternative to radiation hybrid mapping for large-scale genome analysis in barley
A Masoudi-Nejad, S Nasuda, MT Bihoreau, R Waugh, TR Endo
Molecular Genetics and Genomics 274 (6), 589-594, 2005
362005
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Articles 1–20