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J. Patrick Pett
J. Patrick Pett
Postdoc at Wellcome Sanger Institute
Verified email at sanger.ac.uk
Title
Cited by
Cited by
Year
Local and systemic responses to SARS-CoV-2 infection in children and adults
M Yoshida, KB Worlock, N Huang, RGH Lindeboom, CR Butler, ...
Nature 602 (7896), 321-327, 2022
2192022
Feedback loops of the mammalian circadian clock constitute repressilator
JP Pett, A Korenčič, F Wesener, A Kramer, H Herzel
PLoS computational biology 12 (12), e1005266, 2016
1042016
Circadian systems biology: When time matters
L Fuhr, M Abreu, P Pett, A Relógio
Computational and structural biotechnology journal 13, 417-426, 2015
882015
Single-cell RNA sequencing reveals distinct tumor microenvironmental patterns in lung adenocarcinoma
P Bischoff, A Trinks, B Obermayer, JP Pett, J Wiederspahn, F Uhlitz, ...
Oncogene 40 (50), 6748-6758, 2021
862021
A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates
P He, K Lim, D Sun, JP Pett, Q Jeng, K Polanski, Z Dong, L Bolt, ...
Cell 185 (25), 4841-4860. e25, 2022
722022
A spatially resolved atlas of the human lung characterizes a gland-associated immune niche
E Madissoon, AJ Oliver, V Kleshchevnikov, A Wilbrey-Clark, K Polanski, ...
Nature Genetics 55 (1), 66-77, 2023
71*2023
Co-existing feedback loops generate tissue-specific circadian rhythms
JP Pett, M Kondoff, G Bordyugov, A Kramer, H Herzel
Life science alliance 1 (3), 2018
622018
Spatially resolved multiomics of human cardiac niches
K Kanemaru, J Cranley, D Muraro, AMA Miranda, SY Ho, A Wilbrey-Clark, ...
Nature 619 (7971), 801-810, 2023
392023
Organoid modeling of human fetal lung alveolar development reveals mechanisms of cell fate patterning and neonatal respiratory disease
K Lim, APA Donovan, W Tang, D Sun, P He, JP Pett, SA Teichmann, ...
Cell Stem Cell 30 (1), 20-37. e9, 2023
252023
Weak coupling between intracellular feedback loops explains dissociation of clock gene dynamics
C Schmal, D Ono, J Myung, JP Pett, S Honma, KI Honma, H Herzel, ...
PLOS Computational Biology 15 (9), e1007330, 2019
192019
The single‐cell transcriptional landscape of lung carcinoid tumors
P Bischoff, A Trinks, J Wiederspahn, B Obermayer, JP Pett, P Jurmeister, ...
International Journal of Cancer 150 (12), 2058-2071, 2022
102022
Human skeletal muscle aging atlas
VR Kedlian, Y Wang, T Liu, X Chen, L Bolt, C Tudor, Z Shen, ES Fasouli, ...
Nature Aging, 1-18, 2024
72024
Early human lung immune cell development and its role in epithelial cell fate
JL Barnes, M Yoshida, P He, KB Worlock, RGH Lindeboom, C Suo, ...
Science Immunology 8 (90), eadf9988, 2023
62023
Analyses of circRNA Expression throughout the Light-Dark Cycle Reveal a Strong Regulation of Cdr1as, Associated with Light Entrainment in the SCN
A Ivanov, D Mattei, K Radscheit, AC Compagnion, JP Pett, H Herzel, ...
International Journal of Molecular Sciences 23 (20), 12347, 2022
32022
SODAR: enabling, modeling, and managing multi-omics integration studies
M Nieminen, O Stolpe, M Kuhring, J Weiner 3rd, P Pett, D Beule, ...
bioRxiv, 2022.08. 19.504516, 2022
2*2022
Simple kinetic models in molecular chronobiology
JP Pett, PO Westermark, H Herzel
Circadian Clocks: Methods and Protocols, 87-100, 2021
22021
Influence of photic perturbations on circadian rhythms
A Auconi, P Pett, E Klipp, H Herzel
arXiv preprint arXiv:1903.10239, 2019
12019
A spatially-resolved multiomic cell atlas reveals gene regulatory networks underlying cell specification in the developing human heart
J Cranley, S Bayraktar, K Kanemaru, V Knight-Schrijver, JP Pett, ...
European Heart Journal 44 (Supplement_2), ehad655. 3042, 2023
2023
Childhood-onset asthma is characterized by airway epithelial hillock-to-squamous differentiation in early life
ETG Kersten, JP Pett, K Malmström, Y Chun, MR Jonker, A Wilbrey-Clark, ...
bioRxiv, 2023.07. 31.549680, 2023
2023
A spatial multi-omics atlas of the human lung reveals a novel gland-associated immune niche
K Meyer, E Madissoon, A Oliver, V Kleshchevnikov, A Wilbrey-Clark, ...
2022
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