Sophia Tsoka
Sophia Tsoka
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Mapping cis- and trans-regulatory effects across multiple tissues in twins
E Grundberg, KS Small, ÅK Hedman, AC Nica, A Buil, S Keildson, JT Bell, ...
Nature genetics 44 (10), 1084-1089, 2012
Expansion of the BioCyc collection of pathway/genome databases to 160 genomes
PD Karp, CA Ouzounis, C Moore-Kochlacs, L Goldovsky, P Kaipa, ...
Nucleic acids research 33 (19), 6083-6089, 2005
Global analysis of DNA methylation variation in adipose tissue from twins reveals links to disease-associated variants in distal regulatory elements
E Grundberg, E Meduri, JK Sandling, ÅK Hedman, S Keildson, A Buil, ...
The American Journal of Human Genetics 93 (5), 876-890, 2013
Computational analysis of Plasmodium falciparum metabolism: organizing genomic information to facilitate drug discovery
I Yeh, T Hanekamp, S Tsoka, PD Karp, RB Altman
Genome research 14 (5), 917-924, 2004
Microbe-host interplay in atopic dermatitis and psoriasis
N Fyhrquist, G Muirhead, S Prast-Nielsen, M Jeanmougin, P Olah, ...
Nature communications 10 (1), 4703, 2019
The pruritus-and TH2-associated cytokine IL-31 promotes growth of sensory nerves
M Feld, R Garcia, J Buddenkotte, S Katayama, K Lewis, G Muirhead, ...
Journal of Allergy and Clinical Immunology 138 (2), 500-508. e24, 2016
Modeling the percolation of annotation errors in a database of protein sequences
WR Gilks, B Audit, D De Angelis, S Tsoka, CA Ouzounis
Bioinformatics 18 (12), 1641-1649, 2002
CAST: an iterative algorithm for the complexity analysis of sequence tracts
VJ Promponas, AJ Enright, S Tsoka, DP Kreil, C Leroy, S Hamodrakas, ...
Bioinformatics 16 (10), 915-922, 2000
Genome evolution reveals biochemical networks and functional modules
C Von Mering, EM Zdobnov, S Tsoka, FD Ciccarelli, JB Pereira-Leal, ...
Proceedings of the National Academy of Sciences 100 (26), 15428-15433, 2003
Differential methylation of the TRPA1 promoter in pain sensitivity
JT Bell, AK Loomis, LM Butcher, F Gao, B Zhang, CL Hyde, J Sun, H Wu, ...
Nature communications 5 (1), 2978, 2014
The phylogenetic extent of metabolic enzymes and pathways
JM Peregrin-Alvarez, S Tsoka, CA Ouzounis
Genome research 13 (3), 422-427, 2003
A regression tree approach using mathematical programming
L Yang, S Liu, S Tsoka, LG Papageorgiou
Expert Systems with Applications 78, 347-357, 2017
Finding community structures in complex networks using mixed integer optimisation
G Xu, S Tsoka, LG Papageorgiou
The European Physical Journal B 60, 231-239, 2007
Evaluation of annotation strategies using an entire genome sequence
I Iliopoulos, S Tsoka, MA Andrade, AJ Enright, M Carroll, P Poullet, ...
Bioinformatics 19 (6), 717-726, 2003
Characterization of functional methylomes by next-generation capture sequencing identifies novel disease-associated variants
F Allum, X Shao, F Guénard, MM Simon, S Busche, M Caron, ...
Nature communications 6 (1), 7211, 2015
Link prediction methods and their accuracy for different social networks and network metrics
F Gao, K Musial, C Cooper, S Tsoka
Scientific programming 2015, 1-1, 2015
Prediction of protein interactions: metabolic enzymes are frequently involved in gene fusion
S Tsoka, CA Ouzounis
Nature Genetics 26 (2), 141-142, 2000
Mathematical programming for piecewise linear regression analysis
L Yang, S Liu, S Tsoka, LG Papageorgiou
Expert systems with applications 44, 156-167, 2016
Recent developments and future directions in computational genomics
S Tsoka, CA Ouzounis
FEBS letters 480 (1), 42-48, 2000
Percolation of annotation errors through hierarchically structured protein sequence databases
WR Gilks, B Audit, D De Angelis, S Tsoka, CA Ouzounis
Mathematical biosciences 193 (2), 223-234, 2005
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