Sophia Tsoka

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Christos Α. OuzounisAUTH, Thessalonica, Greece • CERTH, Thessalonica, GreeceVerified email at csd.auth.gr
Lazaros PapageorgiouProfessor of Chemical EngineeringVerified email at ucl.ac.uk
Sophia N KaragiannisProfessor of Translational Cancer Immunology and Immunotherapy, King’s College LondonVerified email at kcl.ac.uk
Ainali ChrysanthiDIGNOSIS Ltd, King's College LondonVerified email at dignosis.co
Debra Josephs MBChB, PhD, MRCPConsultant Medical OncologistVerified email at kcl.ac.uk
Songsong LiuHarbin Institute of Technology, ChinaVerified email at hit.edu.cn
Jonathan Cardoso-SilvaLondon School of Economics and Political ScienceVerified email at lse.ac.uk
Gareth MuirheadInstitute of Cancer ResearchVerified email at icr.ac.uk
Aristotelis KittasAristotle University of ThessalonikiVerified email at physics.auth.gr
Chris SanderHarvard Medical School, Broad Institute, Dana-Farber Cancer Institute, Memorial Sloan KetteringVerified email at sanderlab.org
Christian Hundhausen, PhDHHU DüsseldorfVerified email at uni-duesseldorf.de
Caroline Moore-KochlacsBoston UniversityVerified email at bu.edu
STAVROS HAMODRAKASVerified email at biol.uoa.gr
Daniela De AngelisProgramme Leader, Medical Research Council Biostatistics Unit, CambridgeVerified email at mrc-bsu.cam.ac.uk
Russ B AltmanProfessor Stanford UniversityVerified email at stanford.edu
Iwei YehUniversity of California, San FranciscoVerified email at ucsf.edu
Tim D SpectorGuys and St Thomas Hospital NHS Trust, Kings College LondonVerified email at kcl.ac.uk
Paul Jaak JanssenSCK, Belgian Nuclear Research, University of Cape Town, Tufts University, University of GhentVerified email at telenet.be
pereira-leal jOphiomics - Precision MedicineVerified email at ophiomics.com
Ioannis IliopoulosAssociate Professor Medical School University of CreteVerified email at med.uoc.gr

Sophia Tsoka

King's College London

Verified email at kcl.ac.uk

Bioinformatics


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Mapping cis- and trans-regulatory effects across multiple tissues in twins E Grundberg, KS Small, ÅK Hedman, AC Nica, A Buil, S Keildson, JT Bell, ... Nature genetics 44 (10), 1084-1089, 2012	858	2012
Expansion of the BioCyc collection of pathway/genome databases to 160 genomes PD Karp, CA Ouzounis, C Moore-Kochlacs, L Goldovsky, P Kaipa, ... Nucleic acids research 33 (19), 6083-6089, 2005	761	2005
Global analysis of DNA methylation variation in adipose tissue from twins reveals links to disease-associated variants in distal regulatory elements E Grundberg, E Meduri, JK Sandling, ÅK Hedman, S Keildson, A Buil, ... The American Journal of Human Genetics 93 (5), 876-890, 2013	371	2013
Computational analysis of Plasmodium falciparum metabolism: organizing genomic information to facilitate drug discovery I Yeh, T Hanekamp, S Tsoka, PD Karp, RB Altman Genome research 14 (5), 917-924, 2004	291	2004
Microbe-host interplay in atopic dermatitis and psoriasis N Fyhrquist, G Muirhead, S Prast-Nielsen, M Jeanmougin, P Olah, ... Nature communications 10 (1), 4703, 2019	223	2019
The pruritus-and TH2-associated cytokine IL-31 promotes growth of sensory nerves M Feld, R Garcia, J Buddenkotte, S Katayama, K Lewis, G Muirhead, ... Journal of Allergy and Clinical Immunology 138 (2), 500-508. e24, 2016	219	2016
Modeling the percolation of annotation errors in a database of protein sequences WR Gilks, B Audit, D De Angelis, S Tsoka, CA Ouzounis Bioinformatics 18 (12), 1641-1649, 2002	206	2002
CAST: an iterative algorithm for the complexity analysis of sequence tracts VJ Promponas, AJ Enright, S Tsoka, DP Kreil, C Leroy, S Hamodrakas, ... Bioinformatics 16 (10), 915-922, 2000	206	2000
Genome evolution reveals biochemical networks and functional modules C Von Mering, EM Zdobnov, S Tsoka, FD Ciccarelli, JB Pereira-Leal, ... Proceedings of the National Academy of Sciences 100 (26), 15428-15433, 2003	199	2003
Differential methylation of the TRPA1 promoter in pain sensitivity JT Bell, AK Loomis, LM Butcher, F Gao, B Zhang, CL Hyde, J Sun, H Wu, ... Nature communications 5 (1), 2978, 2014	151	2014
The phylogenetic extent of metabolic enzymes and pathways JM Peregrin-Alvarez, S Tsoka, CA Ouzounis Genome research 13 (3), 422-427, 2003	128	2003
A regression tree approach using mathematical programming L Yang, S Liu, S Tsoka, LG Papageorgiou Expert Systems with Applications 78, 347-357, 2017	121	2017
Finding community structures in complex networks using mixed integer optimisation G Xu, S Tsoka, LG Papageorgiou The European Physical Journal B 60, 231-239, 2007	115	2007
Evaluation of annotation strategies using an entire genome sequence I Iliopoulos, S Tsoka, MA Andrade, AJ Enright, M Carroll, P Poullet, ... Bioinformatics 19 (6), 717-726, 2003	115	2003
Characterization of functional methylomes by next-generation capture sequencing identifies novel disease-associated variants F Allum, X Shao, F Guénard, MM Simon, S Busche, M Caron, ... Nature communications 6 (1), 7211, 2015	114	2015
Link prediction methods and their accuracy for different social networks and network metrics F Gao, K Musial, C Cooper, S Tsoka Scientific programming 2015, 1-1, 2015	112	2015
Prediction of protein interactions: metabolic enzymes are frequently involved in gene fusion S Tsoka, CA Ouzounis Nature Genetics 26 (2), 141-142, 2000	109	2000
Mathematical programming for piecewise linear regression analysis L Yang, S Liu, S Tsoka, LG Papageorgiou Expert systems with applications 44, 156-167, 2016	108	2016
Recent developments and future directions in computational genomics S Tsoka, CA Ouzounis FEBS letters 480 (1), 42-48, 2000	100	2000
Percolation of annotation errors through hierarchically structured protein sequence databases WR Gilks, B Audit, D De Angelis, S Tsoka, CA Ouzounis Mathematical biosciences 193 (2), 223-234, 2005	95	2005

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