|Microevolutionary analysis of Clostridium difficile genomes to investigate transmission|
X Didelot, DW Eyre, M Cule, CL Ip, MA Ansari, D Griffiths, A Vaughan, ...
Genome Biology 13 (12), R118, 2012
|Recombinational switching of the Clostridium difficile S-layer and a novel glycosylation gene cluster revealed by large-scale whole-genome sequencing|
KE Dingle, X Didelot, MA Ansari, DW Eyre, A Vaughan, D Griffiths, CLC Ip, ...
Journal of Infectious Diseases 207 (4), 675–686, 2013
|Comparison of next-generation sequencing technologies for comprehensive assessment of full-length hepatitis C viral genomes|
E Thomson, CLC Ip, A Badhan, MT Christiansen, W Adamson, MA Ansari, ...
Journal of clinical microbiology 54 (10), 2470-2484, 2016
|Efficient inference of recombination hot regions in bacterial genomes|
K Yahara, X Didelot, MA Ansari, SK Sheppard, D Falush
Molecular biology and evolution 31 (6), 1593-1605, 2014
|Genome-to-genome analysis highlights the effect of the human innate and adaptive immune systems on the hepatitis C virus|
MA Ansari, V Pedergnana, CLC Ip, A Magri, A Von Delft, D Bonsall, ...
Nature genetics 49 (5), 666, 2017
|Evolutionary dynamics of Enterococcus faecium reveals complex genomic relationships between isolates with independent emergence of vancomycin resistance.|
SJ van Hal, CLC Ip, MA Ansari, DJ Wilson, B Espedido, SO Jensen, ...
Microbial Genomics, 2015
|Genomic epidemiology reconstructs the introduction and spread of Zika virus in Central America and Mexico|
J Thézé, T Li, L du Plessis, J Bouquet, MUG Kraemer, S Somasekar, G Yu, ...
Cell host & microbe, 2018
|Inference of the properties of the recombination process from whole bacterial genomes|
MA Ansari, X Didelot
Genetics 196 (1), 253-265, 2014
|ve-SEQ: Robust, unbiased enrichment for streamlined detection and whole-genome sequencing of HCV and other highly diverse pathogens|
D Bonsall, MA Ansari, C Ip, A Trebes, A Brown, P Klenerman, D Buck, ...
F1000Research 4 (1062), 2015
|Evaluation of viremia frequencies of a novel human pegivirus by using bioinformatic screening and PCR|
D Bonsall, WF Gregory, CLC Ip, S Donfield, J Iles, MA Ansari, P Piazza, ...
Emerging infectious diseases 22 (4), 671, 2016
|Resistance analysis of genotype 3 hepatitis C virus indicates subtypes inherently resistant to nonstructural protein 5A inhibitors|
D Smith, A Magri, D Bonsall, CLC Ip, A Trebes, A Brown, P Piazza, ...
Hepatology 69 (5), 1861-1872, 2019
|Bayesian inference of the evolution of a phenotype distribution on a phylogenetic tree|
MA Ansari, X Didelot
Genetics 204 (1), 89-98, 2016
|Highly-immunogenic virally-vectored T-cell vaccines cannot overcome subversion of the T-cell response by HCV during chronic infection|
L Swadling, J Halliday, C Kelly, A Brown, S Capone, M Ansari, D Bonsall, ...
Vaccines 4 (3), 27, 2016
|HBV vaccination and PMTCT as elimination tools in the presence of HIV: insights from a clinical cohort and dynamic model|
AL McNaughton, J Lourenço, L Hattingh, E Adland, S Daniels, A Van Zyl, ...
BMC medicine 17 (1), 43, 2019
|Insights from deep sequencing of the HBV genome—unique, tiny, and misunderstood|
AL McNaughton, V D'Arienzo, MA Ansari, SF Lumley, M Littlejohn, ...
|Role of HIV-specific CD8+ T cells in pediatric HIV cure strategies after widespread early viral escape|
EM Leitman, CF Thobakgale, E Adland, MA Ansari, J Raghwani, ...
Journal of Experimental Medicine, jem. 20162123, 2017
|Impact of I nterferon L ambda 4 G enotype on I nterferon‐S timulated G ene E xpression D uring D irect‐A cting A ntiviral T herapy for H epatitis C|
N Ramamurthy, E Marchi, MA Ansari, V Pedergnana, A Mclean, E Hudson, ...
Hepatology 68 (3), 859-871, 2018
|Evidence of CD4+ T cell-mediated immune pressure on the Hepatitis C virus genome|
M Lucas, P Deshpande, I James, A Rauch, K Pfafferott, E Gaylard, ...
Scientific Reports (Nature Publisher Group) 8, 1-10, 2018
|Amino Acid Substitutions in Genotype 3a Hepatitis C Virus Polymerase Protein Affect Responses to Sofosbuvir|
PAC Wing, M Jones, M Cheung, S DaSilva, C Bamford, WYJ Lee, ...
|Illumina and Nanopore methods for whole genome sequencing of hepatitis B virus (HBV)|
AL McNaughton, HE Roberts, D Bonsall, M de Cesare, J Mokaya, ...
Scientific Reports 9 (1), 7081, 2019