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Aivett Bilbao
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Recommendations for reporting ion mobility Mass Spectrometry measurements
V Gabelica, AA Shvartsburg, C Afonso, P Barran, JLP Benesch, ...
Mass spectrometry reviews 38 (3), 291-320, 2019
4092019
Processing strategies and software solutions for data‐independent acquisition in mass spectrometry
A Bilbao, E Varesio, J Luban, C Strambio‐De‐Castillia, G Hopfgartner, ...
Proteomics 15 (5-6), 964-980, 2015
1982015
The use of variable Q1 isolation windows improves selectivity in LC–SWATH–MS acquisition
Y Zhang, A Bilbao, T Bruderer, J Luban, C Strambio-De-Castillia, ...
Journal of proteome research 14 (10), 4359-4371, 2015
1942015
A structural examination and collision cross section database for over 500 metabolites and xenobiotics using drift tube ion mobility spectrometry
X Zheng, NA Aly, Y Zhou, KT Dupuis, A Bilbao, VL Paurus, DJ Orton, ...
Chemical science 8 (11), 7724-7736, 2017
1882017
Integrative analysis of multimodal mass spectrometry data in MZmine 3
R Schmid, S Heuckeroth, A Korf, A Smirnov, O Myers, TS Dyrlund, ...
Nature biotechnology 41 (4), 447-449, 2023
1552023
Conserved intramolecular interactions maintain myosin interacting-heads motifs explaining tarantula muscle super-relaxed state structural basis
L Alamo, D Qi, W Wriggers, A Pinto, J Zhu, A Bilbao, RE Gillilan, S Hu, ...
Journal of molecular biology 428 (6), 1142-1164, 2016
1002016
The state of rhizospheric science in the era of multi-omics: A practical guide to omics technologies
RA White III, A Rivas-Ubach, MI Borkum, M Köberl, A Bilbao, SM Colby, ...
Rhizosphere 3, 212-221, 2017
722017
A preprocessing tool for enhanced ion mobility–mass spectrometry-based omics workflows
A Bilbao, BC Gibbons, SM Stow, JE Kyle, KJ Bloodsworth, SH Payne, ...
Journal of proteome research 21 (3), 798-807, 2021
522021
The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases
SIB Swiss Institute of Bioinformatics Members
Nucleic acids research 44 (D1), D27-D37, 2016
512016
An algorithm to correct saturated mass spectrometry ion abundances for enhanced quantitation and mass accuracy in omic studies
A Bilbao, BC Gibbons, GW Slysz, KL Crowell, ME Monroe, YM Ibrahim, ...
International journal of mass spectrometry 427, 91-99, 2018
312018
From data to knowledge: The future of multi-omics data analysis for the rhizosphere
RA White III, MI Borkum, A Rivas-Ubach, A Bilbao, JP Wendler, SM Colby, ...
Rhizosphere, 2017
302017
Ranking fragment ions based on outlier detection for improved label-free quantification in data-independent acquisition LC–MS/MS
A Bilbao, Y Zhang, E Varesio, J Luban, C Strambio-De-Castillia, F Lisacek, ...
Journal of proteome research 14 (11), 4581-4593, 2015
222015
Online hydrophilic interaction chromatography (HILIC) enhanced top-down mass spectrometry characterization of the SARS-CoV-2 spike receptor-binding domain
JW Wilson, A Bilbao, J Wang, YC Liao, D Velickovic, R Wojcik, ...
Analytical chemistry 94 (15), 5909-5917, 2022
172022
AutoCCS: automated collision cross-section calculation software for ion mobility spectrometry–mass spectrometry
JY Lee, A Bilbao, CR Conant, KJ Bloodsworth, DJ Orton, M Zhou, ...
Bioinformatics 37 (22), 4193-4201, 2021
152021
High-Throughput Large-Scale Targeted Proteomics Assays for Quantifying Pathway Proteins in Pseudomonas putida KT2440
Y Gao, TL Fillmore, N Munoz, GJ Bentley, CW Johnson, J Kim, ...
Frontiers in Bioengineering and Biotechnology 8, 603488, 2020
142020
The state of rhizospheric science in the era of multi-omics: a practical guide to omics technologies. Rhizosphere 3: 212–221
RA White, A Rivas-Ubach, MI Borkum, M Köberl, A Bilbao, SM Colby, ...
132017
PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements
A Bilbao, N Munoz, J Kim, DJ Orton, Y Gao, K Poorey, KR Pomraning, ...
Nature communications 14 (1), 2461, 2023
92023
Evaluation of waveform profiles for traveling wave ion mobility separations in structures for lossless ion manipulations
CR Conant, IK Attah, SVB Garimella, G Nagy, A Bilbao, RD Smith, ...
Journal of the American Society for Mass Spectrometry 32 (1), 225-236, 2020
62020
MZA: a data conversion tool to facilitate software development and artificial intelligence research in multidimensional mass spectrometry
A Bilbao, DH Ross, JY Lee, MT Donor, SM Williams, Y Zhu, YM Ibrahim, ...
Journal of proteome research 22 (2), 508-513, 2022
52022
LipidOz enables automated elucidation of lipid carbon–carbon double bond positions from ozone-induced dissociation mass spectrometry data
DH Ross, JY Lee, A Bilbao, DJ Orton, JG Eder, MC Burnet, ...
Communications Chemistry 6 (1), 74, 2023
42023
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