| Major impacts of widespread structural variation on gene expression and crop improvement in tomato M Alonge, X Wang, M Benoit, S Soyk, L Pereira, L Zhang, H Suresh, ... Cell 182 (1), 145-161. e23, 2020 | 509 | 2020 |
| An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ... Genome biology 17, 1-19, 2016 | 412 | 2016 |
| De novo mutations in schizophrenia implicate chromatin remodeling and support a genetic overlap with autism and intellectual disability SE McCarthy, J Gillis, M Kramer, J Lihm, S Yoon, Y Berstein, M Mistry, ... Molecular psychiatry 19 (6), 652-658, 2014 | 396 | 2014 |
| Comparative cellular analysis of motor cortex in human, marmoset and mouse TE Bakken, NL Jorstad, Q Hu, BB Lake, W Tian, BE Kalmbach, M Crow, ... Nature 598 (7879), 111-119, 2021 | 381 | 2021 |
| Transcriptional architecture of synaptic communication delineates GABAergic neuron identity A Paul, M Crow, R Raudales, M He, J Gillis, ZJ Huang Cell 171 (3), 522-539. e20, 2017 | 377 | 2017 |
| A multimodal cell census and atlas of the mammalian primary motor cortex Principal manuscript editors, Analysis coordination, ... Nature 598 (7879), 86-102, 2021 | 262 | 2021 |
| ‘Guilt by association' is the exception rather than the rule in gene networks J Gillis, P Pavlidis PLoS Comput Biol 8 (3), e1002444, 2012 | 252 | 2012 |
| Guidance for RNA-seq co-expression network construction and analysis: safety in numbers S Ballouz, W Verleyen, J Gillis Bioinformatics 31 (13), 2123-2130, 2015 | 232 | 2015 |
| Characterizing the replicability of cell types defined by single cell RNA-sequencing data using MetaNeighbor M Crow, A Paul, S Ballouz, ZJ Huang, J Gillis Nature communications 9 (1), 884, 2018 | 229 | 2018 |
| The impact of multifunctional genes on" guilt by association" analysis J Gillis, P Pavlidis PloS one 6 (2), e17258, 2011 | 207 | 2011 |
| Is it time to change the reference genome? S Ballouz, A Dobin, JA Gillis Genome biology 20 (1), 159, 2019 | 193 | 2019 |
| A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex Z Yao, H Liu, F Xie, S Fischer, RS Adkins, AI Aldridge, SA Ament, ... Nature 598 (7879), 103-110, 2021 | 190 | 2021 |
| A genome-wide RNAi screen draws a genetic framework for transposon control and primary piRNA biogenesis in Drosophila F Muerdter, PM Guzzardo, J Gillis, Y Luo, Y Yu, C Chen, R Fekete, ... Molecular cell 50 (5), 736-748, 2013 | 180 | 2013 |
| Diverse epigenetic strategies interact to control epidermal differentiation KW Mulder, X Wang, C Escriu, Y Ito, RF Schwarz, J Gillis, G Sirokmany, ... Nature cell biology 14 (7), 753-763, 2012 | 169 | 2012 |
| High-throughput mapping of long-range neuronal projection using in situ sequencing X Chen, YC Sun, H Zhan, JM Kebschull, S Fischer, K Matho, ZJ Huang, ... Cell 179 (3), 772-786. e19, 2019 | 161 | 2019 |
| Cellular anatomy of the mouse primary motor cortex R Muñoz-Castañeda, B Zingg, KS Matho, X Chen, Q Wang, NN Foster, ... Nature 598 (7879), 159-166, 2021 | 146 | 2021 |
| Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery X Xu, M Crow, BR Rice, F Li, B Harris, L Liu, E Demesa-Arevalo, Z Lu, ... Developmental Cell 56 (4), 557-568. e6, 2021 | 144 | 2021 |
| Gemma: a resource for the reuse, sharing and meta-analysis of expression profiling data A Zoubarev, KM Hamer, KD Keshav, EL McCarthy, JRC Santos, ... Bioinformatics 28 (17), 2272-2273, 2012 | 129 | 2012 |
| Gene function analysis in complex data sets using ErmineJ J Gillis, M Mistry, P Pavlidis Nature protocols 5 (6), 1148-1159, 2010 | 125 | 2010 |
| Predictability of human differential gene expression M Crow, N Lim, S Ballouz, P Pavlidis, J Gillis Proceedings of the National Academy of Sciences 116 (13), 6491-6500, 2019 | 116 | 2019 |
Paul PavlidisProfessor of Psychiatry, University of British ColumbiaVerified email at msl.ubc.ca
