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Tom Ferrin
Tom Ferrin
Professor of Pharmaceutical Chemistry, UCSF
Verified email at cgl.ucsf.edu - Homepage
Title
Cited by
Cited by
Year
UCSF Chimera—a visualization system for exploratory research and analysis
EF Pettersen, TD Goddard, CC Huang, GS Couch, DM Greenblatt, ...
Journal of computational chemistry 25 (13), 1605-1612, 2004
432422004
UCSF ChimeraX: Structure visualization for researchers, educators, and developers
EF Pettersen, TD Goddard, CC Huang, EC Meng, GS Couch, TI Croll, ...
Protein science 30 (1), 70-82, 2021
48312021
UCSF ChimeraX: Meeting modern challenges in visualization and analysis
TD Goddard, CC Huang, EC Meng, EF Pettersen, GS Couch, JH Morris, ...
Protein science 27 (1), 14-25, 2018
34822018
A geometric approach to macromolecule-ligand interactions
ID Kuntz, JM Blaney, SJ Oatley, R Langridge, TE Ferrin
Journal of molecular biology 161 (2), 269-288, 1982
31541982
The MIDAS display system
TE Ferrin, CC Huang, LE Jarvis, R Langridge
Journal of molecular graphics 6 (1), 13-27, 1988
12241988
Visualizing density maps with UCSF Chimera
TD Goddard, CC Huang, TE Ferrin
Journal of structural biology 157 (1), 281-287, 2007
8862007
Tools for integrated sequence-structure analysis with UCSF Chimera
EC Meng, EF Pettersen, GS Couch, CC Huang, TE Ferrin
BMC bioinformatics 7, 1-10, 2006
6842006
UCSF Chimera, MODELLER, and IMP: an integrated modeling system
Z Yang, K Lasker, D Schneidman-Duhovny, B Webb, CC Huang, ...
Journal of structural biology 179 (3), 269-278, 2012
6562012
clusterMaker: a multi-algorithm clustering plugin for Cytoscape
JH Morris, L Apeltsin, AM Newman, J Baumbach, T Wittkop, G Su, ...
BMC bioinformatics 12, 1-14, 2011
6052011
Designed divergent evolution of enzyme function
Y Yoshikuni, TE Ferrin, JD Keasling
Nature 440 (7087), 1078-1082, 2006
5312006
Sequence diversity and haplotype structure in the human ABCB1 (MDR1, multidrug resistance transporter) gene
DL Kroetz, C Pauli-Magnus, LM Hodges, CC Huang, M Kawamoto, ...
Pharmacogenetics and Genomics 13 (8), 481-494, 2003
4992003
Using sequence similarity networks for visualization of relationships across diverse protein superfamilies
HJ Atkinson, JH Morris, TE Ferrin, PC Babbitt
PloS one 4 (2), e4345, 2009
4672009
ModBase, a database of annotated comparative protein structure models, and associated resources
U Pieper, BM Webb, DT Barkan, D Schneidman-Duhovny, A Schlessinger, ...
Nucleic acids research 39 (suppl_1), D465-D474, 2010
3462010
Evolutionary conservation predicts function of variants of the human organic cation transporter, OCT1
Y Shu, MK Leabman, B Feng, LM Mangravite, CC Huang, D Stryke, ...
Proceedings of the National Academy of Sciences 100 (10), 5902-5907, 2003
3422003
Real-time color graphics in studies of molecular interactions
R Langridge, TE Ferrin, ID Kuntz, ML Connolly
Science 211 (4483), 661-666, 1981
3201981
MODBASE, a database of annotated comparative protein structure models, and associated resources
U Pieper, N Eswar, H Braberg, MS Madhusudhan, FP Davis, AC Stuart, ...
Nucleic acids research 32 (suppl_1), D217-D222, 2004
3052004
Chimera: an extensible molecular modeling application constructed using standard components
CC Huang, GS Couch, EF Pettersen, TE Ferrin
Pacific symposium on biocomputing 1, 724, 1996
2871996
BayGenomics: a resource of insertional mutations in mouse embryonic stem cells
D Stryke, M Kawamoto, CC Huang, SJ Johns, LA King, CA Harper, ...
Nucleic Acids Research 31 (1), 278-281, 2003
2832003
Natural variation in human membrane transporter genes reveals evolutionary and functional constraints
MK Leabman, CC Huang, J DeYoung, EJ Carlson, TR Taylor, ...
Proceedings of the National Academy of Sciences 100 (10), 5896-5901, 2003
2712003
Software extensions to UCSF chimera for interactive visualization of large molecular assemblies
TD Goddard, CC Huang, TE Ferrin
Structure 13 (3), 473-482, 2005
2672005
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