UCSF Chimera—a visualization system for exploratory research and analysis EF Pettersen, TD Goddard, CC Huang, GS Couch, DM Greenblatt, ... Journal of computational chemistry 25 (13), 1605-1612, 2004 | 44017 | 2004 |
UCSF ChimeraX: Structure visualization for researchers, educators, and developers EF Pettersen, TD Goddard, CC Huang, EC Meng, GS Couch, TI Croll, ... Protein science 30 (1), 70-82, 2021 | 5208 | 2021 |
UCSF ChimeraX: Meeting modern challenges in visualization and analysis TD Goddard, CC Huang, EC Meng, EF Pettersen, GS Couch, JH Morris, ... Protein science 27 (1), 14-25, 2018 | 3664 | 2018 |
A geometric approach to macromolecule-ligand interactions ID Kuntz, JM Blaney, SJ Oatley, R Langridge, TE Ferrin Journal of molecular biology 161 (2), 269-288, 1982 | 3210 | 1982 |
The MIDAS display system TE Ferrin, CC Huang, LE Jarvis, R Langridge Journal of molecular graphics 6 (1), 13-27, 1988 | 1225 | 1988 |
Visualizing density maps with UCSF Chimera TD Goddard, CC Huang, TE Ferrin Journal of structural biology 157 (1), 281-287, 2007 | 900 | 2007 |
Tools for integrated sequence-structure analysis with UCSF Chimera EC Meng, EF Pettersen, GS Couch, CC Huang, TE Ferrin BMC bioinformatics 7, 1-10, 2006 | 697 | 2006 |
UCSF Chimera, MODELLER, and IMP: an integrated modeling system Z Yang, K Lasker, D Schneidman-Duhovny, B Webb, CC Huang, ... Journal of structural biology 179 (3), 269-278, 2012 | 659 | 2012 |
clusterMaker: a multi-algorithm clustering plugin for Cytoscape JH Morris, L Apeltsin, AM Newman, J Baumbach, T Wittkop, G Su, ... BMC bioinformatics 12, 1-14, 2011 | 611 | 2011 |
Designed divergent evolution of enzyme function Y Yoshikuni, TE Ferrin, JD Keasling Nature 440 (7087), 1078-1082, 2006 | 537 | 2006 |
modbase, a database of annotated comparative protein structure models and associated resources U Pieper, N Eswar, BM Webb, D Eramian, L Kelly, DT Barkan, H Carter, ... Nucleic acids research 37 (suppl_1), D347-D354, 2009 | 522 | 2009 |
Sequence diversity and haplotype structure in the human ABCB1 (MDR1, multidrug resistance transporter) gene DL Kroetz, C Pauli-Magnus, LM Hodges, CC Huang, M Kawamoto, ... Pharmacogenetics and Genomics 13 (8), 481-494, 2003 | 502 | 2003 |
Using sequence similarity networks for visualization of relationships across diverse protein superfamilies HJ Atkinson, JH Morris, TE Ferrin, PC Babbitt PloS one 4 (2), e4345, 2009 | 474 | 2009 |
UCSF ChimeraX: Tools for structure building and analysis EC Meng, TD Goddard, EF Pettersen, GS Couch, ZJ Pearson, JH Morris, ... Protein Science 32 (11), e4792, 2023 | 362 | 2023 |
ModBase, a database of annotated comparative protein structure models, and associated resources U Pieper, BM Webb, DT Barkan, D Schneidman-Duhovny, A Schlessinger, ... Nucleic acids research 39 (suppl_1), D465-D474, 2010 | 343 | 2010 |
Evolutionary conservation predicts function of variants of the human organic cation transporter, OCT1 Y Shu, MK Leabman, B Feng, LM Mangravite, CC Huang, D Stryke, ... Proceedings of the National Academy of Sciences 100 (10), 5902-5907, 2003 | 341 | 2003 |
Real-time color graphics in studies of molecular interactions R Langridge, TE Ferrin, ID Kuntz, ML Connolly Science 211 (4483), 661-666, 1981 | 322 | 1981 |
Chimera: an extensible molecular modeling application constructed using standard components CC Huang, GS Couch, EF Pettersen, TE Ferrin Pacific symposium on biocomputing 1, 724, 1996 | 287 | 1996 |
BayGenomics: a resource of insertional mutations in mouse embryonic stem cells D Stryke, M Kawamoto, CC Huang, SJ Johns, LA King, CA Harper, ... Nucleic Acids Research 31 (1), 278-281, 2003 | 282 | 2003 |
Software extensions to UCSF chimera for interactive visualization of large molecular assemblies TD Goddard, CC Huang, TE Ferrin Structure 13 (3), 473-482, 2005 | 271 | 2005 |