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Maximilian Miller
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Tumor restriction by type I collagen opposes tumor-promoting effects of cancer-associated fibroblasts
S Bhattacharjee, F Hamberger, A Ravichandra, M Miller, A Nair, S Affo, ...
The Journal of clinical investigation 131 (11), 2021
1552021
Computational predictors fail to identify amino acid substitution effects at rheostat positions
M Miller, Y Bromberg, L Swint-Kruse
Scientific reports 7 (1), 41329, 2017
472017
Functional sequencing read annotation for high precision microbiome analysis
C Zhu, M Miller, S Marpaka, P Vaysberg, MC Rühlemann, G Wu, ...
Nucleic acids research 46 (4), e23-e23, 2018
402018
fusionDB: assessing microbial diversity and environmental preferences via functional similarity networks
C Zhu, Y Mahlich, M Miller, Y Bromberg
Nucleic Acids Research, 2017
362017
Identifying Crohn’s disease signal from variome analysis
Y Wang, M Miller, Y Astrakhan, BS Petersen, S Schreiber, A Franke, ...
Genome medicine 11 (1), 1-15, 2019
262019
Quantifying structural relationships of metal-binding sites suggests origins of biological electron transfer
Y Bromberg, AA Aptekmann, Y Mahlich, L Cook, S Senn, M Miller, ...
Science advances 8 (2), eabj3984, 2022
252022
funtrp: identifying protein positions for variation driven functional tuning
M Miller, D Vitale, PC Kahn, B Rost, Y Bromberg
Nucleic Acids Research, 2019
252019
Fingerprinting cities: differentiating subway microbiome functionality
C Zhu, M Miller, N Lusskin, Y Mahlich, Y Wang, Z Zeng, Y Bromberg
Biology direct 14, 1-10, 2019
192019
Assessment of methods for predicting the effects of PTEN and TPMT protein variants
V Pejaver, G Babbi, R Casadio, L Folkman, P Katsonis, K Kundu, ...
Human mutation 40 (9), 1495-1506, 2019
152019
Snow microbiome functional analyses reveal novel aspects of microbial metabolism of complex organic compounds
C Zhu, M Miller, N Lusskin, B Bergk Pinto, L Maccario, M Häggblom, ...
Microbiologyopen 9 (9), e1100, 2020
122020
Predicting embryonic aneuploidy rate in IVF patients using whole-exome sequencing
S Sun, M Miller, Y Wang, KM Tyc, X Cao, RT Scott Jr, X Tao, Y Bromberg, ...
Human genetics 141 (10), 1615-1627, 2022
102022
Assessing the performance of in silico methods for predicting the pathogenicity of variants in the gene CHEK2, among Hispanic females with breast cancer
A Voskanian, P Katsonis, O Lichtarge, V Pejaver, P Radivojac, ...
Human mutation 40 (9), 1612-1622, 2019
102019
clubber: removing the bioinformatics bottleneck in big data analyses
M Miller, C Zhu, Y Bromberg
Journal of integrative bioinformatics 14 (2), 20170020, 2017
82017
Expression and regulation of the mer operon in Thermus thermophilus
J Norambuena, M Miller, JM Boyd, T Barkay
Environmental microbiology 22 (4), 1619-1634, 2020
72020
Performance of computational methods for the evaluation of pericentriolar material 1 missense variants in CAGI‐5
AM Monzon, M Carraro, L Chiricosta, F Reggiani, J Han, K Ozturk, ...
Human mutation 40 (9), 1474-1485, 2019
72019
What went wrong with variant effect predictor performance for the PCM1 challenge
M Miller, Y Wang, Y Bromberg
Human mutation 40 (9), 1486-1494, 2019
72019
Computational approaches for unraveling the effects of variation in the human genome and microbiome
C Zhu, M Miller, Z Zeng, Y Wang, Y Mahlich, A Aptekmann, Y Bromberg
Annual Review of Biomedical Data Science 3, 411-432, 2020
52020
Low Diversity of Human Variation Despite Mostly Mild Functional Impact of De Novo Variants
Y Mahlich, M Miller, Z Zeng, Y Bromberg
Frontiers in molecular biosciences 8, 635382, 2021
32021
Snow Microbiome Functional Analyses Reveal Novel Microbial Metabolism of Complex Organic Compounds
C Zhu, M Miller, N Lusskin, B Bergk Pinto, L Maccario, M Haggblom, ...
bioRxiv, 2020.02. 07.938555, 2020
22020
Bio-Node – Bioinformatics in the Cloud
Y Spreen, M Miller
bioRxiv, 2020.04. 15.043596, 2020
12020
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Articles 1–20