| Tumor restriction by type I collagen opposes tumor-promoting effects of cancer-associated fibroblasts S Bhattacharjee, F Hamberger, A Ravichandra, M Miller, A Nair, S Affo, ... The Journal of clinical investigation 131 (11), 2024 | 248 | 2024 |
| Computational predictors fail to identify amino acid substitution effects at rheostat positions M Miller, Y Bromberg, L Swint-Kruse Scientific reports 7 (1), 41329, 2017 | 53 | 2017 |
| Functional sequencing read annotation for high precision microbiome analysis C Zhu, M Miller, S Marpaka, P Vaysberg, MC Rühlemann, G Wu, ... Nucleic acids research 46 (4), e23-e23, 2018 | 50 | 2018 |
| fusionDB: assessing microbial diversity and environmental preferences via functional similarity networks C Zhu, Y Mahlich, M Miller, Y Bromberg Nucleic Acids Research, 2017 | 37 | 2017 |
| Identifying Crohn’s disease signal from variome analysis Y Wang, M Miller, Y Astrakhan, BS Petersen, S Schreiber, A Franke, ... Genome medicine 11, 1-15, 2019 | 34 | 2019 |
| Quantifying structural relationships of metal-binding sites suggests origins of biological electron transfer Y Bromberg, AA Aptekmann, Y Mahlich, L Cook, S Senn, M Miller, ... Science advances 8 (2), eabj3984, 2022 | 31 | 2022 |
| funtrp: identifying protein positions for variation driven functional tuning M Miller, D Vitale, PC Kahn, B Rost, Y Bromberg Nucleic Acids Research, 2019 | 29 | 2019 |
| CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods Genome biology 25 (1), 53, 2024 | 24 | 2024 |
| Fingerprinting cities: differentiating subway microbiome functionality C Zhu, M Miller, N Lusskin, Y Mahlich, Y Wang, Z Zeng, Y Bromberg Biology direct 14, 1-10, 2019 | 21 | 2019 |
| Assessment of methods for predicting the effects of PTEN and TPMT protein variants V Pejaver, G Babbi, R Casadio, L Folkman, P Katsonis, K Kundu, ... Human mutation 40 (9), 1495-1506, 2019 | 20 | 2019 |
| Snow microbiome functional analyses reveal novel aspects of microbial metabolism of complex organic compounds C Zhu, M Miller, N Lusskin, B Bergk Pinto, L Maccario, M Häggblom, ... Microbiologyopen 9 (9), e1100, 2020 | 12 | 2020 |
| Assessing the performance of in silico methods for predicting the pathogenicity of variants in the gene CHEK2, among Hispanic females with breast cancer A Voskanian, P Katsonis, O Lichtarge, V Pejaver, P Radivojac, ... Human mutation 40 (9), 1612-1622, 2019 | 12 | 2019 |
| Predicting embryonic aneuploidy rate in IVF patients using whole-exome sequencing S Sun, M Miller, Y Wang, KM Tyc, X Cao, RT Scott Jr, X Tao, Y Bromberg, ... Human genetics 141 (10), 1615-1627, 2022 | 11 | 2022 |
| Expression and regulation of the mer operon in Thermus thermophilus J Norambuena, M Miller, JM Boyd, T Barkay Environmental microbiology 22 (4), 1619-1634, 2020 | 11 | 2020 |
| What went wrong with variant effect predictor performance for the PCM1 challenge M Miller, Y Wang, Y Bromberg Human mutation 40 (9), 1486-1494, 2019 | 10 | 2019 |
| Performance of computational methods for the evaluation of pericentriolar material 1 missense variants in CAGI‐5 AM Monzon, M Carraro, L Chiricosta, F Reggiani, J Han, K Ozturk, ... Human mutation 40 (9), 1474-1485, 2019 | 9 | 2019 |
| clubber: removing the bioinformatics bottleneck in big data analyses M Miller, C Zhu, Y Bromberg Journal of integrative bioinformatics 14 (2), 20170020, 2017 | 9 | 2017 |
| Computational approaches for unraveling the effects of variation in the human genome and microbiome C Zhu, M Miller, Z Zeng, Y Wang, Y Mahlich, A Aptekmann, Y Bromberg Annual Review of Biomedical Data Science 3 (1), 411-432, 2020 | 8 | 2020 |
| Low diversity of human variation despite mostly mild functional impact of de novo variants Y Mahlich, M Miller, Z Zeng, Y Bromberg Frontiers in molecular biosciences 8, 635382, 2021 | 3 | 2021 |
| Bio-Node – Bioinformatics in the Cloud Y Spreen, M Miller bioRxiv, 2020.04. 15.043596, 2020 | 1 | 2020 |
Yana BrombergEmory University, Departments of Biology and Computer ScienceVerified email at emory.edu
