Ricardo Roberto da Silva
Title
Cited by
Cited by
Year
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
34392019
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
M Wang, JJ Carver, VV Phelan, LM Sanchez, N Garg, Y Peng, ...
Nature biotechnology 34 (8), 828-837, 2016
15692016
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
6272018
American Gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Msystems 3 (3), e00031-18, 2018
2892018
Illuminating the dark matter in metabolomics
RR Silva, PC Dorrestein, RA Quinn
Proceedings of the National Academy of Sciences of the United States of America, 2015
2572015
Feature-based molecular networking in the GNPS analysis environment
LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ...
Nature methods 17 (9), 905-908, 2020
1772020
Mass spectrometry in plant metabolomics strategies: from analytical platforms to data acquisition and processing
M Ernst, DB Silva, RR Silva, RZN Vêncio, NP Lopes
Natural product reports 31 (6), 784-806, 2014
1722014
Bioactivity-Based Molecular Networking for the Discovery of Drug Leads in Natural Product Bioassay-Guided Fractionation
LF Nothias, M Nothias-Esposito, R da Silva, M Wang, I Protsyuk, Z Zhang, ...
J. Nat. Prod., 2018
1372018
Propagating annotations of molecular networks using in silico fragmentation
RR da Silva, M Wang, LF Nothias, JJJ van der Hooft, ...
PLoS Comput Biol, 2018
1202018
Global chemical analysis of biology by mass spectrometry
AA Aksenov, R da Silva, R Knight, NP Lopes, PC Dorrestein
Nature Reviews Chemistry 1 (7), 1-20, 2017
1132017
Global chemical effects of the microbiome include new bile-acid conjugations
RA Quinn, AV Melnik, A Vrbanac, T Fu, KA Patras, MP Christy, Z Bodai, ...
Nature 579 (7797), 123-129, 2020
972020
Prioritizing Natural Product Diversity in a Collection of 146 Bacterial Strains Based on Growth and Extraction Protocols
M Crüsemann, EC O’Neill, CB Larson, AV Melnik, DJ Floros, RR da Silva, ...
Journal of Natural Products, 2016
882016
Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung
Cell Host & Microbe, 2017
712017
Mass spectrometry searches using MASST
M Wang, AK Jarmusch, F Vargas, AA Aksenov, JM Gauglitz, K Weldon, ...
Nature biotechnology 38 (1), 23-26, 2020
612020
The impact of skin care products on skin chemistry and microbiome dynamics
BMC Biology, 2019
562019
High-resolution liquid chromatography tandem mass spectrometry enables large scale molecular characterization of dissolved organic matter
D Petras, I Koester, R Da Silva, BM Stephens, AF Haas, CE Nelson, ...
Frontiers in Marine Science 4, 405, 2017
552017
Queen signals in a stingless bee: suppression of worker ovary activation and spatial distribution of active compounds
TM Nunes, S Mateus, AP Favaris, MFZJ Amaral, LG von Zuben, ...
Scientific reports 4 (1), 1-7, 2014
542014
ProbMetab: an R package for Bayesian probabilistic annotation of LC–MS-based metabolomics
S Ricardo R., F Jourdan, DM Salvanha, F Letisse, EL Jamin, ...
Bioinformatics, 2014
522014
Coupling targeted and untargeted mass spectrometry for metabolome-microbiome-wide association studies of human fecal samples
AV Melnik, RR da Silva, ER Hyde, AA Aksenov, F Vargas, A Bouslimani, ...
Analytical Chemistry, 2017
512017
QIIME 2: reproducible, interactive, scalable, and extensible microbiome data science
E Boylen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints 6, e27295v2, 2018
502018
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