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William DeWitt
William DeWitt
McDonnell Foundation Fellow, UC Berkeley, EECS
Verified email at berkeley.edu - Homepage
Title
Cited by
Cited by
Year
A single-cell atlas of in vivo mammalian chromatin accessibility
DA Cusanovich, AJ Hill, D Aghamirzaie, RM Daza, HA Pliner, JB Berletch, ...
Cell 174 (5), 1309-1324. e18, 2018
6652018
Immunosequencing identifies signatures of cytomegalovirus exposure history and HLA-mediated effects on the T cell repertoire
RO Emerson, WS DeWitt, M Vignali, J Gravley, JK Hu, EJ Osborne, ...
Nature genetics 49 (5), 659-665, 2017
4392017
Dynamics of the cytotoxic T cell response to a model of acute viral infection
WS DeWitt, RO Emerson, P Lindau, M Vignali, TM Snyder, C Desmarais, ...
Journal of virology 89 (8), 4517-4526, 2015
1512015
A public database of memory and naive B-cell receptor sequences
WS DeWitt, P Lindau, TM Snyder, AM Sherwood, M Vignali, CS Carlson, ...
PloS one 11 (8), e0160853, 2016
1442016
Human T cell receptor occurrence patterns encode immune history, genetic background, and receptor specificity
W DeWitt, A Smith, G Schoch, J Hansen, F Matsen, P Bradley
eLife, 2018
1222018
Deep generative models for T cell receptor protein sequences
K Davidsen, BJ Olson, WS DeWitt III, J Feng, E Harkins, P Bradley, ...
Elife 8, e46935, 2019
672019
Using genotype abundance to improve phylogenetic inference
WS DeWitt III, L Mesin, GD Victora, VN Minin, FA Matsen IV
Molecular biology and evolution 35 (5), 1253-1265, 2018
572018
Dynamics of B cell repertoires and emergence of cross-reactive responses in patients with different severities of COVID-19
Z Montague, H Lv, J Otwinowski, WS DeWitt, G Isacchini, GK Yip, WW Ng, ...
Cell Reports 35 (8), 109173, 2021
44*2021
Nonparametric coalescent inference of mutation spectrum history and demography
WS DeWitt, KD Harris, AP Ragsdale, K Harris
Proceedings of the National Academy of Sciences 118 (21), e2013798118, 2021
36*2021
Increased mutation and gene conversion within human segmental duplications
MR Vollger, PC Dishuck, WT Harvey, WS DeWitt, X Guitart, ME Goldberg, ...
Nature 617 (7960), 325-334, 2023
31*2023
A diverse lipid antigen–specific TCR repertoire is clonally expanded during active tuberculosis
WS DeWitt, KKQ Yu, DB Wilburn, A Sherwood, M Vignali, CL Day, ...
The Journal of Immunology 201 (3), 888-896, 2018
312018
Imaging protein statistical substate occupancy in a spectrum-function phase space
W DeWitt, K Chu
Physical review letters 105 (9), 098101, 2010
30*2010
Estimation of cell lineage trees by maximum-likelihood phylogenetics
J Feng, WS DEWITT III, A McKenna, N Simon, AD Willis, FA MATSEN IV
The annals of applied statistics 15 (1), 343, 2021
252021
Multiplexed digital quantitation of rearranged lymphoid receptors in a complex mixture
WS Dewitt, RO Emerson, HS Robins, AM Sherwood
US Patent 10,246,701, 2019
222019
Methods for diagnosing infectious disease and determining HLA status using immune repertoire sequencing
RO Emerson, HS Robins, M Rieder, W Dewitt III, C Carlson
US Patent 11,047,008, 2021
192021
Inferring evolutionary dynamics of mutation rates through the lens of mutation spectrum variation
J Carlson, WS DeWitt, K Harris
Current Opinion in Genetics & Development 62, 50-57, 2020
192020
A biophysical model of viral escape from polyclonal antibodies
TC Yu, ZT Thornton, WW Hannon, WS DeWitt, CE Radford, FA Matsen IV, ...
Virus Evolution 8 (2), veac110, 2022
142022
mutyper: assigning and summarizing mutation types for analyzing germline mutation spectra
WS DeWitt, L Zhu, MR Vollger, ME Goldberg, A Talenti, AC Beichman, ...
Journal of Open Source Software 8 (85), 5227, 2023
52023
Replicate immunosequencing as a robust probe of B cell repertoire diversity
W DeWitt, P Lindau, T Snyder, M Vignali, R Emerson, H Robins
arXiv preprint arXiv:1410.0350, 2014
42014
Jointly modeling deep mutational scans identifies shifted mutational effects among SARS-CoV-2 spike homologs
HK Haddox, JG Galloway, B Dadonaite, JD Bloom, FA Matsen IV, ...
bioRxiv, 2023
32023
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