W. Evan Johnson

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Jeff LeekChief Data Officer, VP, and J Orin Edson Foundation Professor, Fred Hutchinson Cancer CenterAdresse e-mail validée de fredhutch.org
Andrea BildCity of Hope, Professor of Medical Oncology and TherapeuticsAdresse e-mail validée de coh.org
Stephen PiccoloBrigham Young University, Department of BiologyAdresse e-mail validée de byu.edu
John D. StoreyProfessor, Princeton UniversityAdresse e-mail validée de princeton.edu
Hilary ParkerCEO, Stoneware DataAdresse e-mail validée de jhsph.edu
Camron D. BryantProfessor, Northeastern University, Pharmaceutical Sciences, Center for Drug DiscoveryAdresse e-mail validée de northeastern.edu
Andrew E. JaffeVP, Head of Data Sciences, Neumora TherapeuticsAdresse e-mail validée de neumoratx.com
Keith A. CrandallComputational Biology Institute, Department of Biostatistics & Bioinformatics, George WashingtonAdresse e-mail validée de gwu.edu
Cheng LiPrincipal Investigator, School of Life Sciences, Peking University, Beijing, ChinaAdresse e-mail validée de pku.edu.cn
Joshua David CampbellAssociate Professor of Medicine, BUSMAdresse e-mail validée de bu.edu
Eduardo Castro-NallarUniversidad de TalcaAdresse e-mail validée de utalca.cl
Yuqing ZhangApplied Scientist, EtsyAdresse e-mail validée de etsy.com
David JenkinsBoston UniversityAdresse e-mail validée de bu.edu
Natasha HochbergBoston University School of MedicineAdresse e-mail validée de bu.edu
Neema YazdaniPhD Candidate, Boston UniversityAdresse e-mail validée de bu.edu
Mark ClementProfessor of Computer Science, Brigham Young UniversityAdresse e-mail validée de cs.byu.edu
Masanao YajimaBoston UniversityAdresse e-mail validée de bu.edu
Hector Corrada BravoAssociate Professor of Computer Science, University of MarylandAdresse e-mail validée de umiacs.umd.edu
Ying ShenStanford UniversityAdresse e-mail validée de stanford.edu
C. Robert Horsburgh JrProfessor of Epidemiology, Biostatistics, Medicine and Global Health, Boston UniversityAdresse e-mail validée de bu.edu

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W. Evan Johnson

Professor of Medicine

Adresse e-mail validée de rutgers.edu

Data Science Computational Biology Bioinformatics Metagenomics Tuberculosis


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
Adjusting batch effects in microarray expression data using empirical Bayes methods WE Johnson, C Li, A Rabinovic Biostatistics 8 (1), 118-127, 2007	7992	2007
The `sva` package for removing batch effects and other unwanted variation in high-throughput experiments JT Leek, WE Johnson, HS Parker, AE Jaffe, JD Storey Bioinformatics 28 (6), 882-883, 2012	5296	2012
Tackling the widespread and critical impact of batch effects in high-throughput data JT Leek, RB Scharpf, HC Bravo, D Simcha, B Langmead, WE Johnson, ... Nature Reviews Genetics 11 (10), 733-739, 2010	2258	2010
ComBat-seq: batch effect adjustment for RNA-seq count data Y Zhang, G Parmigiani, WE Johnson NAR genomics and bioinformatics 2 (3), lqaa078, 2020	1070	2020
Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing J O'Rawe, T Jiang, G Sun, Y Wu, W Wang, J Hu, P Bodily, L Tian, ... Genome medicine 5, 1-18, 2013	560	2013
sva: Surrogate variable analysis JT Leek, WE Johnson, HS Parker, EJ Fertig, AE Jaffe, JD Storey, Y Zhang, ... R package version 3 (0), 882-883, 2019	530	2019
Model-based analysis of tiling-arrays for ChIP-chip WE Johnson, W Li, CA Meyer, R Gottardo, JS Carroll, M Brown, XS Liu Proceedings of the National Academy of Sciences 103 (33), 12457-12462, 2006	484	2006
Decontamination of ambient RNA in single-cell RNA-seq with DecontX S Yang, SE Corbett, Y Koga, Z Wang, WE Johnson, M Yajima, ... Genome biology 21, 1-15, 2020	358	2020
Using VAAST to identify an X-linked disorder resulting in lethality in male infants due to N-terminal acetyltransferase deficiency AF Rope, K Wang, R Evjenth, J Xing, JJ Johnston, JJ Swensen, B Moore, ... The American Journal of Human Genetics, 2011	302	2011
A single-sample microarray normalization method to facilitate personalized-medicine workflows SR Piccolo, Y Sun, JD Campbell, ME Lenburg, AH Bild, WE Johnson Genomics 100 (6), 337-344, 2012	261	2012
Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results M Rahman, LK Jackson, WE Johnson, DY Li, AH Bild, SR Piccolo Bioinformatics 31 (22), 3666-3672, 2015	231	2015
PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples C Hong, S Manimaran, Y Shen, JF Perez-Rogers, AL Byrd, ... Microbiome 2, 1-15, 2014	228	2014
DNA specificity determinants associate with distinct transcription factor functions PC Hollenhorst, KJ Chandler, RL Poulsen, WE Johnson, NA Speck, ... PLoS genetics 5 (12), e1000778, 2009	223	2009
The cancer microbiome: distinguishing direct and indirect effects requires a systemic view JB Xavier, VB Young, J Skufca, F Ginty, T Testerman, AT Pearson, ... Trends in cancer 6 (3), 192-204, 2020	211	2020
Batch effects and noise in microarray experiments: sources and solutions A Scherer Wiley, 2009	203	2009
Nascent peptides that block protein synthesis in bacteria CJ Woolstenhulme, S Parajuli, DW Healey, DP Valverde, EN Petersen, ... Proceedings of the National Academy of Sciences 110 (10), E878-E887, 2013	185	2013
Combating subclonal evolution of resistant cancer phenotypes SW Brady, JA McQuerry, Y Qiao, SR Piccolo, G Shrestha, DF Jenkins, ... Nature communications 8 (1), 1231, 2017	163	2017
Pathoscope: species identification and strain attribution with unassembled sequencing data OE Francis, M Bendall, S Manimaran, C Hong, NL Clement, ... Genome research 23 (10), 1721-1729, 2013	153	2013
Model-based analysis of two-color arrays (MA2C) JS Song, WE Johnson, X Zhu, X Zhang, W Li, AK Manrai, JS Liu, R Chen, ... Genome biology 8, 1-13, 2007	140	2007
Metataxonomic and metagenomic approaches vs. culture-based techniques for clinical pathology SK Hilton, E Castro-Nallar, M Pérez-Losada, I Toma, TA McCaffrey, ... Frontiers in microbiology 7, 484, 2016	132	2016

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