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Rute R da Fonseca
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Whole-genome analyses resolve early branches in the tree of life of modern birds
ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ...
Science 346 (6215), 1320-1331, 2014
16232014
Comparative genomics reveals insights into avian genome evolution and adaptation
G Zhang, C Li, Q Li, B Li, DM Larkin, C Lee, JF Storz, A Antunes, ...
Science 346 (6215), 1311-1320, 2014
8442014
Patterns of positive selection in six mammalian genomes
C Kosiol, T Vinař, RR da Fonseca, MJ Hubisz, CD Bustamante, R Nielsen, ...
PLoS genetics 4 (8), e1000144, 2008
5632008
The adaptive evolution of the mammalian mitochondrial genome
RR Da Fonseca, WE Johnson, SJ O'Brien, MJ Ramos, A Antunes
BMC genomics 9 (1), 1-22, 2008
3532008
Proteomic analysis of a pleistocene mammoth femur reveals more than one hundred ancient bone proteins
E Cappellini, LJ Jensen, D Szklarczyk, A Ginolhac, RAR da Fonseca, ...
Journal of proteome research 11 (2), 917-926, 2012
2052012
Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits
L Chen, Q Qiu, YU Jiang, K Wang, Z Lin, Z Li, F Bibi, Y Yang, J Wang, ...
Science 364 (6446), eaav6202, 2019
1732019
Next-generation biology: sequencing and data analysis approaches for non-model organisms
RR da Fonseca, A Albrechtsen, GE Themudo, J Ramos-Madrigal, ...
Marine genomics 30, 3-13, 2016
1512016
The origin and evolution of maize in the Southwestern United States
RR Da Fonseca, BD Smith, N Wales, E Cappellini, P Skoglund, ...
Nature plants 1 (1), 1-5, 2015
1412015
Dense sampling of bird diversity increases power of comparative genomics
S Feng, J Stiller, Y Deng, J Armstrong, QI Fang, AH Reeve, D Xie, G Chen, ...
Nature 587 (7833), 252-257, 2020
1372020
Ancient genomics
C Der Sarkissian, ME Allentoft, MC Ávila-Arcos, R Barnett, PF Campos, ...
Philosophical Transactions of the Royal Society B: Biological Sciences 370 …, 2015
1332015
Cephalopods in neuroscience: regulations, research and the 3Rs
G Fiorito, A Affuso, DB Anderson, J Basil, L Bonnaud, G Botta, A Cole, ...
Invertebrate Neuroscience 14 (1), 13-36, 2014
1282014
Analysis of complete mitochondrial genomes from extinct and extant rhinoceroses reveals lack of phylogenetic resolution
E Willerslev, MTP Gilbert, J Binladen, SYW Ho, PF Campos, A Ratan, ...
BMC evolutionary biology 9 (1), 1-11, 2009
1212009
Positive selection on the killer whale mitogenome
AD Foote, PA Morin, JW Durban, RL Pitman, P Wade, E Willerslev, ...
Biology letters 7 (1), 116-118, 2011
1152011
Natural selection shaped the rise and fall of passenger pigeon genomic diversity
GGR Murray, AER Soares, BJ Novak, NK Schaefer, JA Cahill, AJ Baker, ...
Science 358 (6365), 951-954, 2017
1042017
Molecular clocks indicate turnover and diversification of modern coleoid cephalopods during the Mesozoic Marine Revolution
AR Tanner, D Fuchs, IE Winkelmann, MTP Gilbert, MS Pankey, ...
Proceedings of the Royal Society B: Biological Sciences 284 (1850), 20162818, 2017
872017
Molecular evolution and the role of oxidative stress in the expansion and functional diversification of cytosolic glutathione transferases
RR da Fonseca, WE Johnson, SJ O'Brien, V Vasconcelos, A Antunes
BMC evolutionary biology 10 (1), 1-11, 2010
852010
The elusive nature of adaptive mitochondrial DNA evolution of an arctic lineage prone to frequent introgression
J Melo-Ferreira, J Vilela, MM Fonseca, RR da Fonseca, P Boursot, ...
Genome biology and evolution 6 (4), 886-896, 2014
812014
Phylogenomic analyses data of the avian phylogenomics project
ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ...
GigaScience 4 (1), s13742-014-0038-1, 2015
702015
Cephalopod genomics: a plan of strategies and organization
CB Albertin, L Bonnaud, CT Brown, WJ Crookes-Goodson, ...
Standards in genomic sciences 7 (1), 175-188, 2012
602012
Comparative analysis of complete mitochondrial genomes suggests that relaxed purifying selection is driving high nonsynonymous evolutionary rate of the NADH2 gene in whitefish …
MW Jacobsen, RR Da Fonseca, L Bernatchez, MM Hansen
Molecular Phylogenetics and Evolution 95, 161-170, 2016
502016
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