Jan Baumbach

Cited by

	All	Since 2016
Citations	4250	2571
h-index	36	26
i10-index	88	73

880

440

220

660

20072008200920102011201220132014201520162017201820192020202138 53 120 140 139 248 249 330 309 389 406 382 474 878 35

Co-authors

Qihua TanUniversity of Southern DenmarkVerified email at health.sdu.dk
Markus ListBig Data in BioMedicine, Chair of Experimental Bioinformatics, TUM School of Life SciencesVerified email at wzw.tum.de
Vasco Ariston de Carvalho AzevedoProfessor de genética, universidade federal de minas geraisVerified email at icb.ufmg.br
Tobias WittkopStaff Bioinformatics Scientist at Adaptive BiotechnologiesVerified email at wittkop.com
Sven RahmannGenome Informatics, University Hospital Essen, University of Duisburg-EssenVerified email at uni-due.de
Anne-Christin HauschildHead of Medical Informatics, Philipps University of MarburgVerified email at uni-marburg.de
Artur Luiz da Costa da SilvaCentro de Genômica e Biologia de Sistemas, Instituto de Ciências Biológicas, Universidade Federal doVerified email at ufpa.br
Eudes Guilherme Vieira BarbosaBioinformatician, Centogene AGVerified email at centogene.com
Jörg Ingo BaumbachB. Braun Melsungen AG Center of Competence Breath AnalysisVerified email at bbraun.com
Sebastian BöckerProfessor für Bioinformatik, FSU JenaVerified email at uni-jena.de
Simon J. LarsenEnerginetVerified email at energinet.dk
Richa BatraInstitute for Computational Biomedicine, Weill Cornell Medical College of Cornell UniveristyVerified email at med.cornell.edu
Dr. Mario AlbrechtGesellschaft für Informatik e.V. (GI)Verified email at mario-albrecht.de
Rommel RamosLaboratório de Engenharia Biológica / Parque de Ciência e Tecnologia Guamá/Universidade Federal doVerified email at ufpa.br
Gary BaderProfessor of Molecular Genetics and Computer Science, The Donnelly Centre, University of TorontoVerified email at utoronto.ca
Dorothea Emig-AgiusIlluminaVerified email at mpi-inf.mpg.de
Siomar de Castro SoaresResearcher in Bioformatics, Universidade Federal do Triângulo MineiroVerified email at uftm.edu.br
John H MorrisUCSFVerified email at cgl.ucsf.edu
Alfred PühlerCentrum für Biotechnologie, Universität BielefeldVerified email at cebitec.uni-bielefeld.de
Fabio VandinProfessor, Department of Information Engineering, University of PadovaVerified email at unipd.it

Jan Baumbach

University of Hamburg

Verified email at uni-hamburg.de - Homepage

Bioinformatics Computer Science Artifical Intelligence Systems Biology Systems Medicine


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clusterMaker: a multi-algorithm clustering plugin for Cytoscape JH Morris, L Apeltsin, AM Newman, J Baumbach, T Wittkop, G Su, ... BMC bioinformatics 12 (1), 436, 2011	361	2011
AltAnalyze and DomainGraph: analyzing and visualizing exon expression data D Emig, N Salomonis, J Baumbach, T Lengauer, BR Conklin, M Albrecht Nucleic acids research 38 (suppl_2), W755-W762, 2010	252	2010
Graph-based analysis and visualization of experimental results with ONDEX J Köhler, J Baumbach, J Taubert, M Specht, A Skusa, A Rüegg, ... Bioinformatics 22 (11), 1383-1390, 2006	233	2006
Comparing the performance of biomedical clustering methods C Wiwie, J Baumbach, R Röttger Nature methods 12 (11), 1033, 2015	162	2015
Partitioning biological data with transitivity clustering T Wittkop, D Emig, S Lange, S Rahmann, M Albrecht, JH Morris, S Böcker, ... Nature methods 7 (6), 419-420, 2010	120	2010
Current breathomics—a review on data pre-processing techniques and machine learning in metabolomics breath analysis A Smolinska, AC Hauschild, RRR Fijten, JW Dallinga, J Baumbach, ... Journal of breath research 8 (2), 027105, 2014	117	2014
The GlxR regulon of the amino acid producer Corynebacterium glutamicum: in silico and in vitro detection of DNA binding sites of a global transcription regulator TA Kohl, J Baumbach, B Jungwirth, A Pühler, A Tauch Journal of Biotechnology 135 (4), 340-350, 2008	99	2008
Evidence for reductive genome evolution and lateral acquisition of virulence functions in two Corynebacterium pseudotuberculosis strains JC Ruiz, V D'Afonseca, A Silva, A Ali, AC Pinto, AR Santos, AAMC Rocha, ... PloS one 6 (4), e18551, 2011	96	2011
Large scale clustering of protein sequences with FORCE-A layout based heuristic for weighted cluster editing T Wittkop, J Baumbach, FP Lobo, S Rahmann BMC bioinformatics 8 (1), 1-12, 2007	87	2007
Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology G Sturm, F Finotello, F Petitprez, JD Zhang, J Baumbach, WH Fridman, ... Bioinformatics 35 (14), i436-i445, 2019	85	2019
Analysis of the airway microbiota of healthy individuals and patients with chronic obstructive pulmonary disease by T-RFLP and clone sequencing T Zakharkina, E Heinzel, RA Koczulla, T Greulich, K Rentz, JK Pauling, ... PloS one 8 (7), e68302, 2013	84	2013
CoryneRegNet 4.0–A reference database for corynebacterial gene regulatory networks J Baumbach BMC bioinformatics 8 (1), 429, 2007	78	2007
Exact and heuristic algorithms for weighted cluster editing S Rahmann, T Wittkop, J Baumbach, M Martin, A Truss, S Böcker Computational Systems Bioinformatics: (Volume 6), 391-401, 2007	75	2007
CoryneRegNet 6.0—Updated database content, new analysis methods and novel features focusing on community demands J Pauling, R Röttger, A Tauch, V Azevedo, J Baumbach Nucleic acids research 40 (D1), D610-D614, 2012	74	2012
CoryneRegNet: an ontology-based data warehouse of corynebacterial transcription factors and regulatory networks J Baumbach, K Brinkrolf, LF Czaja, S Rahmann, A Tauch BMC genomics 7 (1), 1-12, 2006	74	2006
PIPS: pathogenicity island prediction software SC Soares, VAC Abreu, RTJ Ramos, L Cerdeira, A Silva, J Baumbach, ... PloS one 7 (2), e30848, 2012	70	2012
Comprehensive cluster analysis with Transitivity Clustering T Wittkop, D Emig, A Truss, M Albrecht, S Böcker, J Baumbach Nature protocols 6 (3), 285-295, 2011	64	2011
GIPSy: genomic island prediction software SC Soares, H Geyik, RTJ Ramos, PHCG de Sá, EGV Barbosa, ... Journal of biotechnology 232, 2-11, 2016	62	2016
GEDEVO: an evolutionary graph edit distance algorithm for biological network alignment R Ibragimov, M Malek, J Guo, J Baumbach German Conference on Bioinformatics 2013, 2013	57	2013
From Corynebacterium glutamicum to Mycobacterium tuberculosis—towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet J Krawczyk, TA Kohl, A Goesmann, J Kalinowski, J Baumbach Nucleic Acids Research 37 (14), e97-e97, 2009	52	2009

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