|Roary: rapid large-scale prokaryote pan genome analysis|
AJ Page, CA Cummins, M Hunt, VK Wong, S Reuter, MTG Holden, ...
Bioinformatics 31 (22), 3691-3693, 2015
|Rapid bacterial whole-genome sequencing to enhance diagnostic and public health microbiology|
S Reuter, MJ Ellington, EJP Cartwright, CU Köser, ME Török, T Gouliouris, ...
JAMA internal medicine 173 (15), 1397-1404, 2013
|Parallel independent evolution of pathogenicity within the genus Yersinia|
S Reuter, TR Connor, L Barquist, D Walker, T Feltwell, SR Harris, ...
Proceedings of the National Academy of Sciences 111 (18), 6768-6773, 2014
|A pilot study of rapid whole-genome sequencing for the investigation of a Legionella outbreak|
S Reuter, TG Harrison, CU Köser, MJ Ellington, GP Smith, J Parkhill, ...
BMJ open 3 (1), e002175, 2013
|'Add, stir and reduce': Yersinia spp. as model bacteria for pathogen evolution|
A McNally, NR Thomson, S Reuter, BW Wren
Nature Reviews Microbiology 14 (3), 177-190, 2016
|Rapid whole-genome sequencing for investigation of a suspected tuberculosis outbreak|
ME Török, S Reuter, J Bryant, CU Köser, SV Stinchcombe, B Nazareth, ...
Journal of clinical microbiology 51 (2), 611-614, 2013
|Early insights into the potential of the Oxford Nanopore MinION for the detection of antimicrobial resistance genes|
K Judge, SR Harris, S Reuter, J Parkhill, SJ Peacock
Journal of Antimicrobial Chemotherapy 70 (10), 2775-2778, 2015
|Rapid single-colony whole-genome sequencing of bacterial pathogens|
CU Köser, LJ Fraser, A Ioannou, J Becq, MJ Ellington, MTG Holden, ...
Journal of Antimicrobial Chemotherapy 69 (5), 1275-1281, 2014
|Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland|
S Reuter, ME Török, MTG Holden, R Reynolds, KE Raven, B Blane, ...
Genome research 26 (2), 263-270, 2016
|Whole-genome sequencing reveals transmission of vancomycin-resistant Enterococcus faecium in a healthcare network|
HJ Brodrick, KE Raven, EM Harrison, B Blane, S Reuter, ME Török, ...
Genome medicine 8 (1), 4, 2016
|A decade of genomic history for healthcare-associated Enterococcus faecium in the United Kingdom and Ireland|
KE Raven, S Reuter, R Reynolds, HJ Brodrick, JE Russell, ME Török, ...
Genome research 26 (10), 1388-1396, 2016
|Longitudinal genomic surveillance of MRSA in the UK reveals transmission patterns in hospitals and the community|
F Coll, EM Harrison, MS Toleman, S Reuter, KE Raven, B Blane, ...
Science Translational Medicine 9 (413), eaak9745, 2017
|Clonal differences in Staphylococcus aureus bacteraemia-associated mortality|
M Recker, M Laabei, MS Toleman, S Reuter, RB Saunderson, B Blane, ...
Nature Microbiology 2 (10), 1381, 2017
|Complex Routes of Nosocomial Vancomycin-Resistant Enterococcus faecium Transmission Revealed by Genome Sequencing|
KE Raven, T Gouliouris, H Brodrick, F Coll, NM Brown, R Reynolds, ...
Clinical Infectious Diseases 64 (7), 886-893, 2017
|Comparison of bacterial genome assembly software for MinION data and their applicability to medical microbiology|
K Judge, M Hunt, S Reuter, A Tracey, MA Quail, J Parkhill, SJ Peacock
Microbial Genomics 2 (9), 2016
|Genome-based characterization of hospital-adapted Enterococcus faecalis lineages|
KE Raven, S Reuter, T Gouliouris, R Reynolds, JE Russell, NM Brown, ...
Nature Microbiology 1, 2016
|Emergent and evolving antimicrobial resistance cassettes in community-associated fusidic acid and meticillin-resistant Staphylococcus aureus|
MJ Ellington, S Reuter, SR Harris, MTG Holden, EJ Cartwright, D Greaves, ...
International journal of antimicrobial agents 45 (5), 477-484, 2015
|Systematic Surveillance Detects Multiple Silent Introductions and Household Transmission of Methicillin-Resistant Staphylococcus aureus USA300 in the East of …|
MS Toleman, S Reuter, F Coll, EM Harrison, B Blane, NM Brown, ...
The Journal of infectious diseases 214 (3), 447-453, 2016
|Transmission of methicillin-resistant Staphylococcus aureus in long-term care facilities and their related healthcare networks|
EM Harrison, C Ludden, HJ Brodrick, B Blane, G Brennan, D Morris, ...
Genome Medicine 8 (1), 102, 2016
|Whole genome sequencing of ESBL-producing Escherichia coli isolated from patients, farm waste and canals in Thailand|
C Runcharoen, KE Raven, S Reuter, T Kallonen, S Paksanont, ...
Genome Medicine 9 (1), 81, 2017