Nuno Rodrigues Faria
Nuno Rodrigues Faria
Associate Professor, Sir Henry Dale Research Fellow, University of Oxford
Verified email at zoo.ox.ac.uk - Homepage
TitleCited byYear
Zika virus in the Americas: early epidemiological and genetic findings
NR Faria, RSS Azevedo, MUG Kraemer, R Souza, MS Cunha, SC Hill, ...
Science 352 (6283), 345-9, 2016
7322016
The early spread and epidemic ignition of HIV-1 in human populations
NR Faria, A Rambaut, MA Suchard, G Baele, T Bedford, M Ward, ...
Science 346 (6205), 56-61, 2014
4552014
Emergence and potential for spread of Chikungunya virus in Brazil
MRT Nunes, NR Faria, JM de Vasconcelos, N Golding, MUG Kraemer, ...
BMC Medicine 13 (1), 1, 2015
2852015
Establishment and cryptic transmission of Zika virus in Brazil and the Americas
NR Faria, J Quick, I Morales, J Theze, JG de Jesus, M Giovanetti, ...
Nature 546, 406-410, 2017
2532017
Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci
MS Gill, P Lemey, NR Faria, A Rambaut, B Shapiro, MA Suchard
Molecular Biology and Evolution 30 (3), 713-724, 2013
2282013
The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time
L Josefsson, S von Stockenstrom, NR Faria, E Sinclair, P Bacchetti, ...
Proceedings of the National Academy of Sciences 110 (51), E4987-E4996, 2013
1872013
Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2
P Lemey, A Rambaut, T Bedford, N Faria, F Bielejec, G Baele, CA Russell, ...
PLoS pathogens 10 (2), e1003932, 2014
1862014
Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other tools
AC Pineda-Peña, NR Faria, S Imbrechts, P Libin, AB Abecasis, ...
Infect Genet Evol 19, 337-348, 2013
1792013
Genomic epidemiology reveals multiple introductions of Zika virus into the United States
ND Grubaugh, JT Ladner, MUG Kraemer, G Dudas, AL Tan, ...
Nature, 104794, 2017
1682017
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples
J Quick, ND Grubaugh, ST Pullan, IM Claro, AD Smith, K Gangavarapu, ...
Nature Protocols 12 (6), 1261-1276, 2017
1602017
Virus genomes reveal factors that spread and sustained the Ebola epidemic
G Dudas, LM Carvalho, T Bedford, AJ Tatem, G Baele, NR Faria, DJ Park, ...
Nature 544 (7650), 309, 2017
1502017
Spread of yellow fever virus outbreak in Angola and the Democratic Republic of the Congo 2015–16: a modelling study
MUG Kraemer, NR Faria, RC Reiner Jr, N Golding, B Nikolay, S Stasse, ...
The Lancet infectious diseases 17 (3), 330-338, 2017
1012017
Simultaneously reconstructing viral cross-species transmission history and identifying the underlying constraints
NR Faria, MA Suchard, A Rambaut, DG Streicker, P Lemey
Philosophical Transactions of the Royal Society B: Biological Sciences 368 …, 2013
952013
Mobile real-time surveillance of Zika virus in Brazil
NR Faria, EC Sabino, MRT Nunes, LCJ Alcantara, NJ Loman, OG Pybus
Genome medicine 8 (1), 97, 2016
872016
Single cell analysis of lymph node tissue from HIV-1 infected patients reveals that the majority of CD4+ T-cells contain one HIV-1 DNA molecule
L Josefsson, S Palmer, NR Faria, P Lemey, J Casazza, D Ambrozak, ...
PLoS pathogens 9 (6), e1003432, 2013
852013
Longitudinal genetic characterization reveals that cell proliferation maintains a persistent HIV type 1 DNA pool during effective HIV therapy
S Von Stockenstrom, L Odevall, E Lee, E Sinclair, P Bacchetti, M Killian, ...
The Journal of infectious diseases 212 (4), 596-607, 2015
832015
Phylogeography of dengue virus serotype 4, Brazil, 2010-2011
MRT Nunes, NR Faria, HB Vasconcelos, DBA Medeiros, ...
Emerging Infectious Diseases 18 (11), 1858-1864, 2012
822012
A sensitive assay for virus discovery in respiratory clinical samples
M de Vries, M Deijs, M Canuti, BDC van Schaik, NR Faria, ...
PLoS One 6 (1), e16118, 2011
802011
An integrated map of HIV genome-wide variation from a population perspective
G Li, S Piampongsant, NR Faria, A Voet, AC Pineda-Peña, R Khouri, ...
Retrovirology 12 (1), 18, 2015
752015
Epidemiology of Chikungunya Virus in Bahia, Brazil, 2014-2015
NR Faria, J Lourenço, E Marques de Cerqueira, M Maia de Lima, ...
PLoS Currents Outbreaks, 2016
662016
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