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Ryan Spangler
Ryan Spangler
Research Software Engineer, Altos Labs
Verified email at altoslabs.com
Title
Cited by
Cited by
Year
Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation
DN Macklin, TA Ahn-Horst, H Choi, NA Ruggero, J Carrera, JC Mason, ...
Science 369 (6502), eaav3751, 2020
1272020
In a randomized trial in prostate cancer patients, dietary protein restriction modifies markers of leptin and insulin signaling in plasma extracellular vesicles
E Eitan, V Tosti, CN Suire, E Cava, S Berkowitz, B Bertozzi, SM Raefsky, ...
Aging cell 16 (6), 1430-1433, 2017
492017
Vivarium: an interface and engine for integrative multiscale modeling in computational biology
E Agmon, RK Spangler, CJ Skalnik, W Poole, SM Peirce, JH Morrison, ...
Bioinformatics 38 (7), 1972-1979, 2022
192022
A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery
A Creason, D Haan, K Dang, KE Chiotti, M Inkman, A Lamb, T Yu, Y Hu, ...
Cell systems 12 (8), 827-838. e5, 2021
192021
BioSimulators: a central registry of simulation engines and services for recommending specific tools
B Shaikh, LP Smith, D Vasilescu, G Marupilla, M Wilson, E Agmon, ...
Nucleic acids research 50 (W1), W108-W114, 2022
152022
A Multi-Scale Approach to Modeling E. coli Chemotaxis
E Agmon, RK Spangler
Entropy 22 (10), 1101, 2020
112020
Whole-colony modeling of Escherichia coli
CJ Skalnik, E Agmon, RK Spangler, L Talman, JH Morrison, SM Peirce, ...
bioRxiv, 2021.04. 27.441666, 2021
72021
Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation. Science 369: eaav3751
DN Macklin, TA Ahn-Horst, H Choi, NA Ruggero, J Carrera, JC Mason, ...
52020
Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses
CJ Skalnik, SY Cheah, MY Yang, MB Wolff, RK Spangler, L Talman, ...
PLOS Computational Biology 19 (6), e1011232, 2023
32023
Exploring integrative analysis using the BioMedical evidence graph
A Struck, B Walsh, A Buchanan, JA Lee, R Spangler, JM Stuart, K Ellrott
JCO clinical cancer informatics 4, 147-159, 2020
32020
Tepoxalin targeting of abcb1 overexpressing cancers
S Corsello, R Spangler, R Nagari, T Golub
US Patent App. 17/291,458, 2022
2022
Vanadium compositions and methods for treatment of cancer
S Corsello, R Spangler, R Nagari, T Golub
US Patent App. 17/293,375, 2022
2022
Use of disulfiram and other compounds to treat cancers with loss of chromosome 16q and/or low expression of metallothionein proteins
S Corsello, R Spangler, R Nagari, T Golub
US Patent App. 17/293,381, 2022
2022
Supplementary Materials for Vivarium: an interface and engine for integrative multiscale modeling in computational biology
E Agmon, RK Spangler, CJ Skalnik, W Poole, SM Peirce, JH Morrison, ...
2021
Aryl hydrocarbon receptor (ahr) activator compounds as cancer therapeutics
S Corsello, R Spangler, R Nagari, T Golub, A Madec
2021
Supplementary Materials for A Multi-Scale Approach to Modeling E. coli Chemotaxis
E Agmon, RK Spangler
2020
Discovering Peru: Church, Language, and Society in Context
TM Kelly, R Spangler, K Woolley
Creighton University, 2014
2014
Using Reinforcement Learning to Optimize the Rules of a Board Game
G Sun, R Spangler
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