Charlotte Deane

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Matthew IJ RaybouldPostdoctoral Researcher in Immunoinformatics, University of OxfordVerified email at stats.ox.ac.uk
Sebastian KelmSenior Principal Scientist, CADD, UCBVerified email at ucb.com
Konrad KrawczykAssistant Professor in Computational Precision Medicine - SDU.dk, Founder at NaturalAntibodyVerified email at stats.ox.ac.uk
Bernhard KnappUniversity of OxfordVerified email at meduniwien.ac.at
Gesine ReinertProfessor of Statistics, University of Oxford Verified email at stats.ox.ac.uk
Jinwoo LeemDirector of Machine Learning, AlchemabVerified email at alchemab.com
Tom L BlundellEmeritus Professor of Biochemistry, University of CambridgeVerified email at cam.ac.uk
Aleksandr Kovaltsuk, DPhilUniversity of OxfordVerified email at stats.ox.ac.uk
Garrett M. MorrisUniversity of OxfordVerified email at stats.ox.ac.uk
Anthony BradleyUniversity of LiverpoolVerified email at liverpool.ac.uk
Frank von DelftPrincipal Investigator: Protein Crystallography, SGC, Oxford UniversityVerified email at sgc.ox.ac.uk
Wing Ki WongSenior Scientist, RocheVerified email at roche.com
Kenji MizuguchiOsaka University / National Institutes of Biomedical Innovation, Health and NutritionVerified email at protein.osaka-u.ac.jp
Rhodri SaundersCoreva Scientific GmbH & Co. KG.Verified email at coreva-scientific.com
Brian MarsdenCentre for Medicines Discovery & Wellcome Centre for Human GeneticsVerified email at cmd.ox.ac.uk
Nick S JonesMathematics, Imperial College LondonVerified email at imperial.ac.uk
John P. OveringtonCTO, ExscientiaVerified email at exscientia.co.uk
Mason PorterUCLAVerified email at math.ucla.edu
Prof. Jean-Paul EbejerUniversity of MaltaVerified email at um.edu.mt
Yoonjoo ChoiAssociate Professor, Medical Research Center, Chonnam National University Medical SchoolVerified email at jnu.ac.kr

Charlotte Deane

Professor of Structural Bioinformatics, Oxford University

Verified email at stats.ox.ac.uk - Homepage

Bioinformatics Structural Bioinformatics Protein evolution Immunoinformatics


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Protein interactions: two methods for assessment of the reliability of high throughput observations CM Deane, Ł Salwinski, I Xenarios, D Eisenberg Molecular & Cellular Proteomics 1 (5), 349-356, 2002	917	2002
HOMSTRAD: a database of protein structure alignments for homologous families K Mizuguchi, CM Deane, TL Blundell, JP Overington Protein science 7 (11), 2469-2471, 1998	661	1998
SAbDab: the structural antibody database J Dunbar, K Krawczyk, J Leem, T Baker, A Fuchs, G Georges, J Shi, ... Nucleic acids research 42 (D1), D1140-D1146, 2014	518	2014
JOY: protein sequence-structure representation and analysis. K Mizuguchi, CM Deane, TL Blundell, MS Johnson, JP Overington Bioinformatics (Oxford, England) 14 (7), 617-623, 1998	482	1998
Reduced amounts and abnormal forms of phospholipase C zeta (PLCζ) in spermatozoa from infertile men E Heytens, J Parrington, K Coward, C Young, S Lambrecht, SY Yoon, ... Human Reproduction 24 (10), 2417-2428, 2009	357	2009
CoV-AbDab: the coronavirus antibody database MIJ Raybould, A Kovaltsuk, C Marks, CM Deane Bioinformatics 37 (5), 734-735, 2021	341	2021
ANARCI: antigen receptor numbering and receptor classification J Dunbar, CM Deane Bioinformatics 32 (2), 298-300, 2016	325	2016
Five computational developability guidelines for therapeutic antibody profiling MIJ Raybould, C Marks, K Krawczyk, B Taddese, J Nowak, AP Lewis, ... Proceedings of the National Academy of Sciences 116 (10), 4025-4030, 2019	288	2019
A multi-crystal method for extracting obscured crystallographic states from conventionally uninterpretable electron density NM Pearce, T Krojer, AR Bradley, P Collins, RP Nowak, R Talon, ... Nature communications 8 (1), 15123, 2017	258	2017
Freely available conformer generation methods: how good are they? JP Ebejer, GM Morris, CM Deane Journal of chemical information and modeling 52 (5), 1146-1158, 2012	239	2012
Avoiding false positive conclusions in molecular simulation: the importance of replicas B Knapp, L Ospina, CM Deane Journal of Chemical Theory and Computation 14 (12), 6127-6138, 2018	234	2018
The prospects of quantum computing in computational molecular biology C Outeiral, M Strahm, J Shi, GM Morris, SC Benjamin, CM Deane Wiley Interdisciplinary Reviews: Computational Molecular Science 11 (1), e1481, 2021	229	2021
ABodyBuilder: Automated antibody structure prediction with data–driven accuracy estimation J Leem, J Dunbar, G Georges, J Shi, CM Deane MAbs 8 (7), 1259-1268, 2016	215	2016
Synonymous codon usage influences the local protein structure observed R Saunders, CM Deane Nucleic acids research 38 (19), 6719-6728, 2010	207	2010
Deep generative models for 3D linker design F Imrie, AR Bradley, M van der Schaar, CM Deane Journal of chemical information and modeling 60 (4), 1983-1995, 2020	203	2020
SAbPred: a structure-based antibody prediction server J Dunbar, K Krawczyk, J Leem, C Marks, J Nowak, C Regep, G Georges, ... Nucleic acids research 44 (W1), W474-W478, 2016	203	2016
Observed antibody space: a resource for data mining next-generation sequencing of antibody repertoires A Kovaltsuk, J Leem, S Kelm, J Snowden, CM Deane, K Krawczyk The Journal of Immunology 201 (8), 2502-2509, 2018	200	2018
FREAD revisited: accurate loop structure prediction using a database search algorithm Y Choi, CM Deane Proteins: Structure, Function, and Bioinformatics 78 (6), 1431-1440, 2010	199	2010
CODA: a combined algorithm for predicting the structurally variable regions of protein models CM Deane, TL Blundell Protein Science 10 (3), 599-612, 2001	183	2001
Improving B-cell epitope prediction and its application to global antibody-antigen docking K Krawczyk, X Liu, T Baker, J Shi, CM Deane Bioinformatics 30 (16), 2288-2294, 2014	172	2014

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