Marco S. Nobile
TitleCited byYear
Graphics Processing Units in Bioinformatics, Computational Biology and Systems Biology
MS Nobile, P Cazzaniga, A Tangherloni, D Besozzi
Briefings in Bioinformatics 18 (5), 870-885, 2016
482016
A GPU-based multi-swarm PSO method for parameter estimation in stochastic biological systems exploiting discrete-time target series
MS Nobile, D Besozzi, P Cazzaniga, G Mauri, D Pescini
Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics …, 2012
472012
GPU-accelerated simulations of mass-action kinetics models with cupSODA
MS Nobile, P Cazzaniga, D Besozzi, G Mauri
The Journal of Supercomputing 69 (1), 17-24, 2014
382014
Computational strategies for a system-level understanding of metabolism
P Cazzaniga, C Damiani, D Besozzi, R Colombo, M Nobile, D Gaglio, ...
Metabolites 4 (4), 1034-1087, 2014
362014
Fuzzy Self-Tuning PSO: A settings-free algorithm for global optimization
MS Nobile, P Cazzaniga, D Besozzi, R Colombo, G Mauri, G Pasi
Swarm and Evolutionary Computation 39, 70-85, 2018
352018
cuTauLeaping: A GPU-powered tau-leaping stochastic simulator for massive parallel analyses of biological systems
MS Nobile, P Cazzaniga, D Besozzi, D Pescini, G Mauri
PLoS One 9 (3), e91963, 2014
292014
The impact of particles initialization in PSO: parameter estimation as a case in point
P Cazzaniga, MS Nobile, D Besozzi
2015 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2015
222015
Proactive particles in swarm optimization: a self-tuning algorithm based on fuzzy logic
MS Nobile, G Pasi, P Cazzaniga, D Besozzi, R Colombo, G Mauri
2015 IEEE International Conference on Fuzzy Systems (FUZZ-IEEE), 1-8, 2015
212015
Reverse engineering of kinetic reaction networks by means of Cartesian Genetic Programming and Particle Swarm Optimization
MS Nobile, D Besozzi, P Cazzaniga, D Pescini, G Mauri
2013 IEEE Congress on Evolutionary Computation, 1594-1601, 2013
182013
cupSODA: a CUDA-powered simulator of mass-action kinetics
MS Nobile, D Besozzi, P Cazzaniga, G Mauri, D Pescini
International Conference on Parallel Computing Technologies, 344-357, 2013
172013
Estimating reaction constants in stochastic biological systems with a multi-swarm PSO running on GPUs
MS Nobile, D Besozzi, P Cazzaniga, G Mauri, D Pescini
Proceedings of the 14th annual conference companion on Genetic and …, 2012
162012
MedGA: a novel evolutionary method for image enhancement in medical imaging systems
L Rundo, A Tangherloni, MS Nobile, C Militello, D Besozzi, G Mauri, ...
Expert Systems with Applications 119, 387-399, 2019
142019
Proactive particles in swarm optimization: A settings-free algorithm for real-parameter single objective optimization problems
A Tangherloni, L Rundo, MS Nobile
2017 IEEE Congress on Evolutionary Computation (CEC), 1940-1947, 2017
112017
Computational intelligence for parameter estimation of biochemical systems
MS Nobile, A Tangherloni, L Rundo, S Spolaor, D Besozzi, G Mauri, ...
2018 IEEE Congress on Evolutionary Computation (CEC), 1-8, 2018
92018
LASSIE: simulating large-scale models of biochemical systems on GPUs
A Tangherloni, MS Nobile, D Besozzi, G Mauri, P Cazzaniga
BMC Bioinformatics 18 (1), 246, 2017
92017
Reboot strategies in particle swarm optimization and their impact on parameter estimation of biochemical systems
S Spolaor, A Tangherloni, L Rundo, MS Nobile, P Cazzaniga
2017 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2017
92017
The foundation of Evolutionary Petri Nets
MS Nobile, D Besozzi, P Cazzaniga, G Mauri
4th International Workshop on Biological Processes & Petri Nets (BioPPN 2013 …, 2013
82013
Massive exploration of perturbed conditions of the blood coagulation cascade through GPU parallelization
P Cazzaniga, MS Nobile, D Besozzi, M Bellini, G Mauri
BioMed research international 2014, 2014
72014
GPU-powered model analysis with PySB/cupSODA
LA Harris, MS Nobile, JC Pino, ALR Lubbock, D Besozzi, G Mauri, ...
Bioinformatics 33 (21), 3492-3494, 2017
62017
Parallel implementation of efficient search schemes for the inference of cancer progression models
D Ramazzotti, MS Nobile, P Cazzaniga, G Mauri, M Antoniotti
2016 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2016
62016
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