Anthony J. Cox
Anthony J. Cox
Computational Biology Group, Illumina Cambridge Ltd.
Verified email at
Cited by
Cited by
A map of human genome variation from population-scale sequencing
1000 Genomes Project Consortium
Nature 467 (7319), 1061-1073, 2010
Accurate whole human genome sequencing using reversible terminator chemistry
DR Bentley, S Balasubramanian, HP Swerdlow, GP Smith, J Milton, ...
Nature 456 (7218), 53-59, 2008
A comprehensive catalogue of somatic mutations from a human cancer genome
ED Pleasance, RK Cheetham, PJ Stephens, DJ McBride, SJ Humphray, ...
Nature 463 (7278), 191-196, 2010
Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications
X Chen, O Schulz-Trieglaff, R Shaw, B Barnes, F Schlesinger, M Källberg, ...
Bioinformatics 32 (8), 1220-1222, 2016
SSAHA: a fast search method for large DNA databases
Z Ning, AJ Cox, JC Mullikin
Genome research 11 (10), 1725-1729, 2001
Haplotype Estimation Using Sequencing Reads
O Delaneau, B Howie, AJ Cox, JF Zagury, J Marchini
The American Journal of Human Genetics 93 (4), 687-696, 2013
Toward the $1000 human genome
ST Bennett, C Barnes, A Cox, L Davies, C Brown
Pharmacogenomics 6 (4), 373-382, 2005
Genome sequencing and analysis of the Tasmanian devil and its transmissible cancer
EP Murchison, OB Schulz-Trieglaff, Z Ning, LB Alexandrov, MJ Bauer, ...
Cell 148 (4), 780-791, 2012
Genomic diversity among drug sensitive and multidrug resistant isolates of Mycobacterium tuberculosis with identical DNA fingerprints
S Niemann, CU Köser, S Gagneux, C Plinke, S Homolka, H Bignell, ...
PLoS One 4 (10), e7407, 2009
NxTrim: optimized trimming of Illumina mate pair reads
J O’Connell, O Schulz-Trieglaff, E Carlson, MM Hims, NA Gormley, ...
Bioinformatics 31 (12), 2035-2037, 2015
Large-scale compression of genomic sequence databases with the Burrows–Wheeler transform
AJ Cox, MJ Bauer, T Jakobi, G Rosone
Bioinformatics 28 (11), 1415-1419, 2012
CNAseg—a novel framework for identification of copy number changes in cancer from second-generation sequencing data
S Ivakhno, T Royce, AJ Cox, DJ Evers, RK Cheetham, S Tavaré
Bioinformatics 26 (24), 3051-3058, 2010
Lightweight algorithms for constructing and inverting the BWT of string collections
MJ Bauer, AJ Cox, G Rosone
Theoretical Computer Science 483, 134-148, 2013
Data processing system and methods
F Garcia, K Maisinger, S Tanner, J Moon, T Mann, ML Parkinson, AJ Cox, ...
US Patent 8,965,076, 2015
Stability of Householder QR factorization for weighted least squares problems
AJ Cox, NJ Higham
Numerical Analysis, 57-73, 1997
Lightweight BWT construction for very large string collections
MJ Bauer, AJ Cox, G Rosone
Combinatorial Pattern Matching: 22nd Annual Symposium, CPM 2011, Palermo …, 2011
Accuracy and stability of the null space method for solving the equality constrained least squares problem
AJ Cox, NJ Higham
BIT Numerical Mathematics 39 (1), 34-50, 1999
BEETL-fastq: a searchable compressed archive for DNA reads
L Janin, O Schulz-Trieglaff, AJ Cox
Bioinformatics 30 (19), 2796-2801, 2014
Adaptive reference-free compression of sequence quality scores
L Janin, G Rosone, AJ Cox
Bioinformatics 30 (1), 24-30, 2014
AKT: ancestry and kinship toolkit
R Arthur, O Schulz-Trieglaff, AJ Cox, J O’Connell
Bioinformatics 33 (1), 142-144, 2016
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