| Kavosh: a new algorithm for finding network motifs ZRM Kashani, H Ahrabian, E Elahi, A Nowzari-Dalini, ES Ansari, S Asadi, ... BMC bioinformatics 10, 1-12, 2009 | 298 | 2009 |
| A systematic survey of centrality measures for protein-protein interaction networks M Ashtiani, A Salehzadeh-Yazdi, Z Razaghi-Moghadam, H Hennig, ... BMC systems biology 12, 1-17, 2018 | 198 | 2018 |
| The essentiality of reporting Hardy-Weinberg equilibrium calculations in population-based genetic association studies A Namipashaki, Z Razaghi-Moghadam, N Ansari-Pour Cell Journal (Yakhteh) 17 (2), 187, 2015 | 131 | 2015 |
| Building blocks of biological networks: a review on major network motif discovery algorithms A Masoudi-Nejad, F Schreiber, ZRM Kashani IET systems biology 6 (5), 164-174, 2012 | 98 | 2012 |
| Supervised learning of gene-regulatory networks based on graph distance profiles of transcriptomics data Z Razaghi-Moghadam, Z Nikoloski NPJ systems biology and applications 6 (1), 21, 2020 | 47 | 2020 |
| Identification of the crucial residues in the early insertion of pardaxin into different phospholipid bilayers M Jafari, F Mehrnejad, R Aghdami, N Chaparzadeh, ... Journal of Chemical Information and Modeling 57 (4), 929-941, 2017 | 17 | 2017 |
| Testis-specific Y-centric protein–protein interaction network provides clues to the etiology of severe spermatogenic failure N Ansari-Pour, Z Razaghi-Moghadam, F Barneh, M Jafari Journal of proteome research 15 (3), 1011-1022, 2016 | 17 | 2016 |
| GeneReg: a constraint-based approach for design of feasible metabolic engineering strategies at the gene level Z Razaghi-Moghadam, Z Nikoloski Bioinformatics 37 (12), 1717-1723, 2021 | 16 | 2021 |
| HybridRanker: integrating network topology and biomedical knowledge to prioritize cancer candidate genes Z Razaghi-Moghadam, R Abdollahi, S Goliaei, M Ebrahimi Journal of biomedical informatics 64, 139-146, 2016 | 14 | 2016 |
| Characterization of effects of genetic variants via genome-scale metabolic modelling H Tong, A Küken, Z Razaghi-Moghadam, Z Nikoloski Cellular and Molecular Life Sciences 78 (12), 5123-5138, 2021 | 13 | 2021 |
| CytoKavosh: a Cytoscape plug-in for finding network motifs in large biological networks A Masoudi-Nejad, M Ansariola, Z Razaghi Moghadam Kashani, ... Public Library of Science 7 (8), e43287, 2012 | 13 | 2012 |
| Data integration across conditions improves turnover number estimates and metabolic predictions P Wendering, M Arend, Z Razaghi-Moghadam, Z Nikoloski Nature Communications 14 (1), 1485, 2023 | 12 | 2023 |
| Maximization of non-idle enzymes improves the coverage of the estimated maximal in vivo enzyme catalytic rates in Escherichia coli R Xu, Z Razaghi-Moghadam, Z Nikoloski Bioinformatics 37 (21), 3848-3855, 2021 | 12 | 2021 |
| Supervised learning of gene regulatory networks Z Razaghi‐Moghadam, Z Nikoloski Current protocols in plant biology 5 (2), e20106, 2020 | 12 | 2020 |
| CAMIRADA: Cancer microRNA association discovery algorithm, a case study on breast cancer S Shamsizadeh, S Goliaei, ZR Moghadam Journal of biomedical informatics 94, 103180, 2019 | 12 | 2019 |
| Systems genetics of nonsyndromic orofacial clefting provides insights into its complex aetiology Z Razaghi-Moghadam, A Namipashaki, S Farahmand, N Ansari-Pour European Journal of Human Genetics 27 (2), 226-234, 2019 | 10 | 2019 |
| Cancerouspdomains: comprehensive analysis of cancer type-specific recurrent somatic mutations in proteins and domains S Hashemi, A Nowzari Dalini, A Jalali, AM Banaei-Moghaddam, ... BMC bioinformatics 18, 1-18, 2017 | 10 | 2017 |
| CytoGTA: A cytoscape plugin for identifying discriminative subnetwork markers using a game theoretic approach S Farahmand, MH Foroughmand-Araabi, S Goliaei, ... PloS one 12 (10), e0185016, 2017 | 10 | 2017 |
| GTA: a game theoretic approach to identifying cancer subnetwork markers S Farahmand, S Goliaei, N Ansari-Pour, Z Razaghi-Moghadam Molecular BioSystems 12 (3), 818-825, 2016 | 10 | 2016 |
| RANGI: a fast list-colored graph motif finding algorithm AG Rudi, S Shahrivari, S Jalili, ZRM Kashani IEEE/ACM transactions on computational biology and bioinformatics 10 (2 …, 2012 | 8 | 2012 |
