The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries L Barquist, M Mayho, C Cummins, AK Cain, CJ Boinett, AJ Page, ... Bioinformatics 32 (7), 1109-1111, 2016 | 191 | 2016 |
Approaches to querying bacterial genomes with transposon-insertion sequencing L Barquist, CJ Boinett, AK Cain RNA biology 10 (7), 1161-1169, 2013 | 185 | 2013 |
High-throughput analysis of gene essentiality and sporulation in Clostridium difficile M Dembek, L Barquist, CJ Boinett, AK Cain, M Mayho, TD Lawley, ... MBio 6 (2), 10.1128/mbio. 02383-14, 2015 | 172 | 2015 |
An amphipathic peptide with antibiotic activity against multidrug-resistant Gram-negative bacteria AG Elliott, JX Huang, S Neve, J Zuegg, IA Edwards, AK Cain, CJ Boinett, ... Nature communications 11 (1), 3184, 2020 | 119 | 2020 |
The phylogeography and incidence of multi-drug resistant typhoid fever in sub-Saharan Africa SE Park, DT Pham, C Boinett, VK Wong, GD Pak, U Panzner, ... Nature communications 9 (1), 5094, 2018 | 111 | 2018 |
Recent independent emergence of multiple multidrug-resistant Serratia marcescens clones within the United Kingdom and Ireland D Moradigaravand, CJ Boinett, V Martin, SJ Peacock, J Parkhill Genome research 26 (8), 1101-1109, 2016 | 106 | 2016 |
A high‐resolution genomic analysis of multidrug‐resistant hospital outbreaks of Klebsiella pneumoniae H Chung The, A Karkey, D Pham Thanh, CJ Boinett, AK Cain, M Ellington, ... EMBO molecular medicine 7 (3), 227-239, 2015 | 98 | 2015 |
Gag determinants of fitness and drug susceptibility in protease inhibitor-resistant human immunodeficiency virus type 1 CM Parry, A Kohli, CJ Boinett, GJ Towers, AL McCormick, D Pillay Journal of virology 83 (18), 9094-9101, 2009 | 94 | 2009 |
The secondary resistome of multidrug-resistant Klebsiella pneumoniae B Jana, AK Cain, WT Doerrler, CJ Boinett, MC Fookes, J Parkhill, ... Scientific reports 7 (1), 42483, 2017 | 85 | 2017 |
Molecular epidemiology of Klebsiella pneumoniae invasive infections over a decade at Kilifi County Hospital in Kenya SP Henson, CJ Boinett, MJ Ellington, N Kagia, S Mwarumba, S Nyongesa, ... International Journal of Medical Microbiology 307 (7), 422-429, 2017 | 81 | 2017 |
Clinical and laboratory-induced colistin-resistance mechanisms in Acinetobacter baumannii CJ Boinett, AK Cain, J Hawkey, NT Do Hoang, NNT Khanh, DP Thanh, ... Microbial genomics 5 (2), e000246, 2019 | 57 | 2019 |
Commensal Escherichiacoli are a reservoir for the transfer of XDR plasmids into epidemic fluoroquinolone-resistant Shigella sonnei P Thanh Duy, TN Thi Nguyen, D Vu Thuy, H Chung The, F Alcock, ... Nature microbiology 5 (2), 256-264, 2020 | 50 | 2020 |
The Murray collection of pre-antibiotic era Enterobacteriacae: a unique research resource KS Baker, E Burnett, H McGregor, A Deheer-Graham, C Boinett, ... Genome Medicine 7, 1-7, 2015 | 46 | 2015 |
Genome-wide mutational biases fuel transcriptional diversity in the Mycobacterium tuberculosis complex Á Chiner-Oms, M Berney, C Boinett, F González-Candelas, DB Young, ... Nature communications 10 (1), 3994, 2019 | 43 | 2019 |
Exploiting genomics to mitigate the public health impact of antimicrobial resistance C Waddington, ME Carey, CJ Boinett, E Higginson, B Veeraraghavan, ... Genome Medicine 14 (1), 15, 2022 | 41 | 2022 |
Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei H Chung The, C Boinett, D Pham Thanh, C Jenkins, FX Weill, BP Howden, ... Nature communications 10 (1), 4828, 2019 | 41 | 2019 |
Fluorescence-based flow sorting in parallel with transposon insertion site sequencing identifies multidrug efflux systems in Acinetobacter baumannii KA Hassan, AK Cain, TT Huang, Q Liu, LDH Elbourne, CJ Boinett, ... MBio 7 (5), 10.1128/mbio. 01200-16, 2016 | 34 | 2016 |
O-antigen-dependent colicin insensitivity of uropathogenic Escherichia coli C Sharp, C Boinett, A Cain, NG Housden, S Kumar, K Turner, J Parkhill, ... Journal of bacteriology 201 (4), 10.1128/jb. 00545-18, 2019 | 33 | 2019 |
The essential genomic landscape of the commensal Bifidobacterium breve UCC2003 L Ruiz, F Bottacini, CJ Boinett, AK Cain, M O’Connell-Motherway, ... Scientific Reports 7 (1), 5648, 2017 | 33 | 2017 |
Investigating the Campylobacter jejuni transcriptional response to host intestinal extracts reveals the involvement of a widely conserved iron uptake system MM Liu, CJ Boinett, ACK Chan, J Parkhill, MEP Murphy, EC Gaynor MBio 9 (4), 10.1128/mbio. 01347-18, 2018 | 30 | 2018 |