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Damien Farrell
Damien Farrell
Verified email at ucd.ie
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Progress in the prediction of pKa values in proteins
E Alexov, EL Mehler, N Baker, A M Baptista, Y Huang, F Milletti, ...
Proteins: Structure, Function, and Bioinformatics 79 (12), 3260–3275, 2011
2742011
Remeasuring HEWL pKa values by NMR spectroscopy: Methods, analysis, accuracy, and implications for theoretical pKa calculations
H Webb, BM Tynan‐Connolly, GM Lee, D Farrell, F O'Meara, ...
Proteins: Structure, Function, and Bioinformatics 79 (3), 685-702, 2011
1142011
Protein dielectric constants determined from NMR chemical shift perturbations
P Kukic, D Farrell, LP McIntosh, B García-Moreno E, KS Jensen, Z Toleikis, ...
Journal of the American Chemical Society 135 (45), 16968-16976, 2013
932013
The Identification of Circulating MiRNA in Bovine Serum and Their Potential as Novel Biomarkers of Early Mycobacterium avium subsp paratuberculosis Infection
D Farrell, RG Shaughnessy, L Britton, DE MacHugh, B Markey, ...
PloS one 10 (7), e0134310, 2015
652015
Titration_DB: Storage and analysis of NMR‐monitored protein pH titration curves
D Farrell, ES Miranda, H Webb, N Georgi, PB Crowley, LP McIntosh, ...
Proteins: Structure, Function, and Bioinformatics 78 (4), 843-857, 2010
522010
Updated reference genome sequence and annotation of Mycobacterium bovis AF2122/97
KM Malone, D Farrell, TP Stuber, OT Schubert, R Aebersold, ...
Genome announcements 5 (14), 10.1128/genomea. 00157-17, 2017
442017
Identification of Mycobacterium spp. of veterinary importance using rpoB gene sequencing
J Higgins, P Camp, D Farrell, D Bravo, M Pate, S Robbe-Austerman
BMC veterinary research 7, 1-14, 2011
412011
Analysis of Biobanked Serum from a Mycobacterium avium subsp paratuberculosis Bovine Infection Model Confirms the Remarkable Stability of Circulating …
RG Shaughnessy, D Farrell, K Riepema, D Bakker, SV Gordon
PLoS One 10 (12), e0145089, 2015
372015
Improving the analysis of NMR spectra tracking pH‐induced conformational changes: Removing artefacts of the electric field on the NMR chemical shift
P Kukić, D Farrell, CR Søndergaard, U Bjarnadottir, J Bradley, G Pollastri, ...
Proteins: Structure, Function, and Bioinformatics 78 (4), 971-984, 2010
312010
Identification of microRNAs in bovine faeces and their potential as biomarkers of Johne’s Disease
RG Shaughnessy, D Farrell, B Stojkovic, JA Browne, K Kenny, SV Gordon
Scientific reports 10 (1), 5908, 2020
222020
Integrated computational prediction and experimental validation identifies promiscuous T cell epitopes in the proteome of Mycobacterium bovis
D Farrell, G Jones, C Pirson, K Malone, K Rue-Albrecht, AJ Chubb, ...
Microbial genomics 2 (8), e000071, 2016
222016
On the development of protein pKa calculation algorithms
T Carstensen, D Farrell, Y Huang, NA Baker, JE Nielsen
Proteins: Structure, Function, and Bioinformatics 79 (12), 3287–3298, 2011
222011
Evidence for local and international spread of Mycobacterium avium subspecies paratuberculosis through whole genome sequencing of isolates from the island of Ireland
V Perets, A Allen, J Crispell, S Cassidy, A O’Connor, D Farrell, JA Browne, ...
Veterinary Microbiology 268, 109416, 2022
122022
M.; Shen, JK; Warwicker, J.; Williams, S
E Alexov, EL Mehler, N Baker, AM Baptista, Y Huang, F Milletti, ...
Word, JM Proteins: Struct., Funct., Genet 79, 3260-3275, 2011
112011
B. García-Moreno E, KS Jensen, Z. Toleikis, K. Teilum, and JE Nielsen
P Kukic, D Farrell, LP McIntosh
J. Am. Chem. Soc 135 (45), 16968-16976, 2013
102013
Highly Perturbed pKa Values in the Unfolded State of Hen Egg White Lysozyme
J Bradley, F O'Meara, D Farrell, JE Nielsen
Biophysical Journal 102 (7), 1636-1645, 2012
102012
The TbD1 Locus Mediates a Hypoxia-Induced Copper Response in Mycobacterium bovis
R Ma, D Farrell, G Gonzalez, JA Browne, Y Suzuki, SV Gordon
Frontiers in Microbiology 13, 817952, 2022
82022
Towards fast determination of protein stability maps: experimental and theoretical analysis of mutants of a Nocardiopsis prasina serine protease
D Farrell, H Webb, MA Johnston, TA Poulsen, F O'Meara, ...
Biochemistry 51 (26), 5339-5347, 2012
72012
Performance and Agreement Between WGS Variant Calling Pipelines Used for Bovine Tuberculosis Control: Toward International Standardization
V Lorente-Leal, D Farrell, B Romero, J Álvarez, L Juan, SV Gordon
Frontiers in Veterinary Science 8, 780018, 2021
62021
Independent genomic polymorphisms in the PknH serine threonine kinase locus during evolution of the Mycobacterium tuberculosis Complex affect virulence and …
E Mata, D Farrell, R Ma, S Uranga, AB Gomez, M Monzon, J Badiola, ...
PLoS Pathogens 16 (12), e1009061, 2020
62020
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Articles 1–20