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Samuel Demharter
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Joint analysis of heterogeneous single-cell RNA-seq dataset collections
N Barkas, V Petukhov, D Nikolaeva, Y Lozinsky, S Demharter, ...
Nature methods 16 (8), 695-698, 2019
2342019
Tuning cytokine receptor signaling by re-orienting dimer geometry with surrogate ligands
I Moraga, G Wernig, S Wilmes, V Gryshkova, CP Richter, WJ Hong, ...
Cell 160 (6), 1196-1208, 2015
1582015
Tracing the origin of adult intestinal stem cells
J Guiu, E Hannezo, S Yui, S Demharter, S Ulyanchenko, M Maimets, ...
Nature 570 (7759), 107-111, 2019
1222019
Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis
U Pfisterer, V Petukhov, S Demharter, J Meichsner, JJ Thompson, ...
Nature communications 11 (1), 5038, 2020
1072020
Current status and future challenges in T-cell receptor/peptide/MHC molecular dynamics simulations
B Knapp, S Demharter, R Esmaielbeiki, CM Deane
Briefings in bioinformatics 16 (6), 1035-1044, 2015
512015
Core mitochondrial genes are down-regulated during SARS-CoV-2 infection of rodent and human hosts
JW Guarnieri, JM Dybas, H Fazelinia, MS Kim, J Frere, Y Zhang, ...
Science translational medicine 15 (708), eabq1533, 2023
362023
Exploring peptide/MHC detachment processes using hierarchical natural move Monte Carlo
B Knapp, S Demharter, CM Deane, P Minary
Bioinformatics 32 (2), 181-186, 2016
242016
Neuroserpin expression during human brain development and in adult brain revealed by immunohistochemistry and single cell RNA sequencing
I Adorjan, T Tyler, A Bhaduri, S Demharter, CK Finszter, M Bako, ...
Journal of anatomy 235 (3), 543-554, 2019
222019
Identifying interactions in omics data for clinical biomarker discovery using symbolic regression
NJ Christensen, S Demharter, M Machado, L Pedersen, M Salvatore, ...
Bioinformatics 38 (15), 3749-3758, 2022
212022
Complex IV subunit isoform COX 6A2 protects fast‐spiking interneurons from oxidative stress and supports their function
B Sanz‐Morello, U Pfisterer, N Winther Hansen, S Demharter, A Thakur, ...
The EMBO Journal 39 (18), e105759, 2020
152020
A large-scale genome-wide gene expression analysis in peripheral blood identifies very few differentially expressed genes related to antidepressant treatment and response in …
AK Nøhr, M Lindow, A Forsingdal, S Demharter, T Nielsen, R Buller, ...
Neuropsychopharmacology 46 (7), 1324-1332, 2021
112021
Ten simple rules for surviving an interdisciplinary PhD
S Demharter, N Pearce, K Beattie, I Frost, J Leem, A Martin, ...
PLoS Computational Biology 13 (5), e1005512, 2017
112017
Modeling functional motions of biological systems by customized natural moves
S Demharter, B Knapp, CM Deane, P Minary
Biophysical Journal 111 (4), 710-721, 2016
92016
In silico structural modeling of multiple epigenetic marks on DNA
K Krawczyk, S Demharter, B Knapp, CM Deane, P Minary
Bioinformatics 34 (1), 41-48, 2018
82018
Ductal keratin 15+ luminal progenitors in normal breast exhibit a basal-like breast cancer transcriptomic signature
KT Kohler, N Goldhammer, S Demharter, U Pfisterer, K Khodosevich, ...
NPJ Breast Cancer 8 (1), 81, 2022
72022
Coordinated maintenance of H3K36/K27 methylation by histone demethylases preserves germ cell identity and immortality
N Zaghet, K Madsen, F Rossi, DF Perez, PG Amendola, S Demharter, ...
Cell Reports 37 (8), 2021
52021
Dissection of gastric homeostasis in vivo facilitates permanent capture of isthmus-like stem cells in vitro
AJ Huebner, RA Gorelov, R Deviatiiarov, S Demharter, T Kull, RM Walsh, ...
Nature Cell Biology 25 (3), 390-403, 2023
32023
HLA-DM Stabilizes the Empty MHCII Binding Groove: A Model Using Customized Natural Move Monte Carlo
S Demharter, B Knapp, C Deane, P Minary
Journal of Chemical Information and Modeling 59 (6), 2894-2899, 2019
32019
More than a feeling: Dermatological changes impacted by spaceflight
H Cope, J Elsborg, S Demharter, JT Mcdonald, C Wernecke, ...
Research Square, 2023
22023
Explainable machine learning identifies multi-omics signatures of muscle response to spaceflight in mice
K Li, R Desai, RT Scott, JR Steele, M Machado, S Demharter, A Hoarfrost, ...
npj Microgravity 9 (1), 90, 2023
12023
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