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Khushboo Bafna
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De novo protein design by deep network hallucination
I Anishchenko, SJ Pellock, TM Chidyausiku, TA Ramelot, S Ovchinnikov, ...
Nature 600 (7889), 547-552, 2021
4042021
Structural similarity of SARS-CoV2 Mpro and HCV NS3/4A proteases suggests new approaches for identifying existing drugs useful as COVID-19 therapeutics
K Bafna, RM Krug, GT Montelione
ChemRxiv, 2020
712020
Hepatitis C virus drugs that inhibit SARS-CoV-2 papain-like protease synergize with remdesivir to suppress viral replication in cell culture
K Bafna, K White, B Harish, R Rosales, TA Ramelot, TB Acton, E Moreno, ...
Cell reports 35 (7), 2021
592021
Conservation of dynamics associated with biological function in an enzyme superfamily
C Narayanan, DN Bernard, K Bafna, D Gagné, CS Chennubhotla, ...
Structure 26 (3), 426-436. e3, 2018
422018
Applications of NMR and computational methodologies to study protein dynamics
C Narayanan, K Bafna, LD Roux, PK Agarwal, N Doucet
Archives of biochemistry and biophysics 628, 71-80, 2017
362017
Computational structure-based de novo design of hypothetical inhibitors against the anti-inflammatory target COX-2
JK Dhanjal, AK Sreenidhi, K Bafna, SP Katiyar, S Goyal, A Grover, ...
PloS one 10 (8), e0134691, 2015
342015
The bitter barricading of prostaglandin biosynthesis pathway: understanding the molecular mechanism of selective cyclooxygenase-2 inhibition by amarogentin, a secoiridoid …
S Shukla, K Bafna, D Sundar, SS Thorat
PLoS One 9 (3), e90637, 2014
332014
Enzyme dynamics: Looking beyond a single structure
PK Agarwal, DN Bernard, K Bafna, N Doucet
ChemCatChem 12 (19), 4704-4720, 2020
322020
Differential substrate recognition by maltose binding proteins influenced by structure and dynamics
S Shukla, K Bafna, C Gullett, DAA Myles, PK Agarwal, MJ Cuneo
Biochemistry 57 (40), 5864-5876, 2018
252018
Ligand-induced variations in structural and dynamical properties within an enzyme superfamily
C Narayanan, DN Bernard, K Bafna, D Gagné, PK Agarwal, N Doucet
Frontiers in Molecular Biosciences 5, 54, 2018
202018
Structural similarities between SARS-CoV2 3CLpro and other viral proteases suggest potential lead molecules for developing broad spectrum antivirals
K Bafna, CL Cioffi, RM Krug, GT Montelione
Frontiers in Chemistry 10, 948553, 2022
82022
Hepatitis C Virus drugs simeprevir and grazoprevir synergize with remdesivir to suppress SARS-CoV-2 replication in Cell Culture
K Bafna, K White, B Harish, R Rosales, TA Ramelot, TB Acton, E Moreno, ...
BioRxiv, 2020.12. 13.422511, 2020
82020
Sequence-specific backbone resonance assignments and microsecond timescale molecular dynamics simulation of human eosinophil-derived neurotoxin
D Gagné, C Narayanan, K Bafna, LA Charest, PK Agarwal, N Doucet
Biomolecular NMR assignments 11, 143-149, 2017
8*2017
Hepatitis C virus drugs that inhibit SARS-CoV-2 papain-like protease synergize with remdesivir to suppress viral replication in cell culture. Cell Rep 35: 109133
K Bafna, K White, B Harish, R Rosales, TA Ramelot, TB Acton, E Moreno, ...
72021
Aspects of weak interactions between folate and glycine betaine
PP Bhojane, MR Duff Jr, K Bafna, GP Rimmer, PK Agarwal, EE Howell
Biochemistry 55 (45), 6282-6294, 2016
72016
Insights into structural and dynamical changes experienced by human RNase 6 upon ligand binding
C Narayanan, DN Bernard, M Létourneau, J Gagnon, D Gagné, K Bafna, ...
Biochemistry 59 (6), 755-765, 2020
62020
Nucleotide substrate binding characterization in human pancreatic-type ribonucleases
K Bafna, C Narayanan, SC Chennubhotla, N Doucet, PK Agarwal
PLoS One 14 (8), e0220037, 2019
62019
Small angle neutron scattering studies of R67 dihydrofolate reductase, a tetrameric protein with intrinsically disordered N-termini
PP Bhojane, MR Duff Jr, K Bafna, P Agarwal, C Stanley, EE Howell
Biochemistry 56 (44), 5886-5899, 2017
62017
Conformational exchange divergence along the evolutionary pathway of eosinophil-associated ribonucleases
DN Bernard, C Narayanan, T Hempel, K Bafna, PP Bhojane, ...
Structure 31 (3), 329-342. e4, 2023
32023
Protocol for production and purification of SARS-CoV-2 3CLpro
L Mazzei, R Greene-Cramer, K Bafna, A Jovanovic, A De Falco, TB Acton, ...
STAR protocols 4 (2), 102326, 2023
22023
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Articles 1–20