Fran Supek
Fran Supek
Genome Data Science (group leader), IRB Barcelona; ICREA Research Professor
Verified email at irb.hr - Homepage
Title
Cited by
Cited by
Year
REVIGO summarizes and visualizes long lists of gene ontology terms
F Supek, M Bošnjak, N Škunca, T Šmuc
PloS one 6 (7), e21800, 2011
30452011
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
7152013
Synonymous mutations frequently act as driver mutations in human cancers
F Supek, B Miñana, J Valcárcel, T Gabaldón, B Lehner
Cell 156 (6), 1324-1335, 2014
3882014
Differential DNA mismatch repair underlies mutation rate variation across the human genome
F Supek, B Lehner
Nature 521 (7550), 81-84, 2015
2452015
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17 (1), 1-19, 2016
2422016
The rules and impact of nonsense-mediated mRNA decay in human cancers
RGH Lindeboom, F Supek, B Lehner
Nature genetics 48 (10), 1112-1118, 2016
1602016
Comparison of codon usage measures and their applicability in prediction of microbial gene expressivity
F Supek, K Vlahoviček
BMC bioinformatics 6 (1), 182, 2005
1232005
INCA: synonymous codon usage analysis and clustering by means of self-organizing map
F Supek, K Vlahoviček
Bioinformatics 20 (14), 2329-2330, 2004
1112004
Clustered Mutation Signatures Reveal that Error-Prone DNA Repair Targets Mutations to Active Genes
F Supek, B Lehner
Cell 130 (3), 534-547, 2017
912017
On relevance of codon usage to expression of synthetic and natural genes in Escherichia coli
F Supek
Genetics 185 (3), 1129-1134, 2010
812010
MUFFINN: cancer gene discovery via network analysis of somatic mutation data
A Cho, JE Shim, E Kim, F Supek, B Lehner, I Lee
Genome biology 17 (1), 1-16, 2016
772016
Translational selection is ubiquitous in prokaryotes
F Supek, N Škunca, J Repar, K Vlahoviček, T Šmuc
PLoS Genet 6 (6), e1001004, 2010
752010
The landscape of microbial phenotypic traits and associated genes
M Brbić, M Piškorec, V Vidulin, A Kriško, T Šmuc, F Supek
Nucleic acids research, gkw964, 2016
502016
Antitumor potential of crown ethers: structure− activity relationships, cell cycle disturbances, and cell death studies of a series of ionophores
M Marjanović, M Kralj, F Supek, L Frkanec, I Piantanida, T Šmuc, ...
Journal of medicinal chemistry 50 (5), 1007-1018, 2007
502007
Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition
B Rodriguez-Martin, EG Alvarez, A Baez-Ortega, J Zamora, F Supek, ...
Nature genetics 52 (3), 306-319, 2020
47*2020
Accurate models for P-gp drug recognition induced from a cancer cell line cytotoxicity screen
J Levatić, J Ćurak, M Kralj, T Šmuc, M Osmak, F Supek
Journal of medicinal chemistry 56 (14), 5691-5708, 2013
462013
Inferring gene function from evolutionary change in signatures of translation efficiency
A Krisko, T Copic, T Gabaldón, B Lehner, F Supek
Genome biology 15 (3), 1-17, 2014
452014
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20 (1), 1-23, 2019
442019
The code of silence: widespread associations between synonymous codon biases and gene function
F Supek
Journal of molecular evolution 82 (1), 65-73, 2016
422016
Phyletic profiling with cliques of orthologs is enhanced by signatures of paralogy relationships
N Škunca, M Bošnjak, A Kriško, P Panov, S Džeroski, T Šmuc, F Supek
PLoS Comput Biol 9 (1), e1002852, 2013
412013
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Articles 1–20