|The genomes of Oryza sativa: a history of duplications|
J Yu, J Wang, W Lin, S Li, H Li, J Zhou, P Ni, W Dong, S Hu, C Zeng, ...
PLoS biology 3 (2), 2005
|A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms|
International Chicken Polymorphism Map Consortium
Nature 432 (7018), 717, 2004
|SilkDB: a knowledgebase for silkworm biology and genomics|
J Wang, Q Xia, X He, M Dai, J Ruan, J Chen, G Yu, H Yuan, Y Hu, R Li, ...
Nucleic acids research 33 (suppl_1), D399-D402, 2005
|Bookmarking by specific and nonspecific binding of FoxA1 pioneer factor to mitotic chromosomes|
JM Caravaca, G Donahue, JS Becker, X He, C Vinson, KS Zaret
Genes & Development 27 (3), 251-260, 2013
|MethyCancer: the database of human DNA methylation and cancer|
X He, S Chang, J Zhang, Q Zhao, H Xiang, K Kusonmano, L Yang, ...
Nucleic acids research 36 (suppl_1), D836-D841, 2007
|BGI‐RIS: an integrated information resource and comparative analysis workbench for rice genomics|
W Zhao, J Wang, X He, X Huang, Y Jiao, M Dai, S Wei, J Fu, Y Chen, ...
Nucleic acids research 32 (suppl_1), D377-D382, 2004
|Evolution of an antifreeze protein by neofunctionalization under escape from adaptive conflict|
C Deng, CHC Cheng, H Ye, X He, L Chen
Proceedings of the National Academy of Sciences 107 (50), 21593-21598, 2010
|CG methylated microarrays identify a novel methylated sequence bound by the CEBPB| ATF4 heterodimer that is active in vivo|
IK Mann, R Chatterjee, J Zhao, X He, MT Weirauch, TR Hughes, C Vinson
Genome research 23 (6), 988-997, 2013
|ChickVD: a sequence variation database for the chicken genome|
J Wang, X He, J Ruan, M Dai, J Chen, Y Zhang, Y Hu, C Ye, S Li, L Cong, ...
Nucleic acids research 33 (suppl_1), D438-D441, 2005
|Contribution of nucleosome binding preferences and co-occurring DNA sequences to transcription factor binding|
X He, R Chatterjee, S John, H Bravo, BK Sathyanarayana, SC Biddie, ...
BMC genomics 14 (1), 428, 2013
|Integrating epigenomics into the understanding of biomedical insight|
Y Han, X He
Bioinformatics and Biology insights 10, BBI. S38427, 2016
|5-Methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC) enhance the DNA binding of CREB1 to the C/EBP half-site tetranucleotide GCAA|
KS Syed, X He, D Tillo, J Wang, SR Durell, C Vinson
Biochemistry 55 (49), 6940-6948, 2016
|5-Hydroxymethylcytosine in E-box motifs ACAT| GTG and ACAC| GTG increases DNA-binding of the B-HLH transcription factor TCF4|
S Khund-Sayeed, X He, T Holzberg, J Wang, D Rajagopal, S Upadhyay, ...
Integrative Biology 8 (9), 936-945, 2016
|Methylated cytosines mutate to transcription factor binding sites that drive tetrapod evolution|
X He, D Tillo, J Vierstra, KS Syed, C Deng, GJ Ray, ...
Genome biology and evolution 7 (11), 3155-3169, 2015
|Overlapping ETS and CRE Motifs (G/CCGGAAGTGACGTCA) Preferentially Bound by GABPα and CREB Proteins|
R Chatterjee, J Zhao, X He, A Shlyakhtenko, I Mann, JJ Waterfall, ...
G3: Genes, Genomes, Genetics 2 (10), 1243-1256, 2012
|The E protein is a multifunctional membrane protein of SARS-CoV|
Q Wu, Y Zhang, H Lü, J Wang, X He, Y Liu, C Ye, W Lin, J Hu, J Ji, J Xu, ...
Genomics, proteomics & bioinformatics 1 (2), 131-144, 2003
|High-resolution genome-wide DNA methylation maps of mouse primary female dermal fibroblasts and keratinocytes|
R Chatterjee, X He, D Huang, P FitzGerald, A Smith, C Vinson
EPIGENETICS & CHROMATIN 7 (1), 35, 2014
|Systematic evaluation of genome-wide methylated DNA enrichment using a CpG island array|
L Yang, K Zhang, W Dai, X He, Q Zhao, J Wang, ZS Sun
BMC genomics 12 (1), 10, 2011
|High levels of serum β2-microglobulin predict severity of coronary artery disease|
L You, R Xie, H Hu, G Gu, H Zheng, J Zhang, X Yang, X He, W Cui
BMC cardiovascular disorders 17 (1), 71, 2017
|The Epstein-Barr virus B-ZIP protein Zta recognizes specific DNA sequences containing 5-methylcytosine and 5-hydroxymethylcytosine|
D Tillo, S Ray, KS Syed, MR Gaylor, X He, J Wang, N Assad, SR Durell, ...
Biochemistry 56 (47), 6200-6210, 2017