| Conformational landscape of a virus by single-particle X-ray scattering A Hosseinizadeh, G Mashayekhi, J Copperman, P Schwander, A Dashti, ... Nature Methods 14 (9), 877-881, 2017 | 81 | 2017 |
| Connexin-46/50 in a dynamic lipid environment resolved by CryoEM at 1.9 Å JA Flores, BG Haddad, KA Dolan, JB Myers, CC Yoshioka, J Copperman, ... Nature communications 11 (1), 4331, 2020 | 80 | 2020 |
| An analytical coarse-graining method which preserves the free energy, structural correlations, and thermodynamic state of polymer melts from the atomistic to the mesoscale J McCarty, AJ Clark, J Copperman, MG Guenza The Journal of chemical physics 140 (20), 2014 | 80 | 2014 |
| Computational estimation of microsecond to second atomistic folding times U Adhikari, B Mostofian, J Copperman, SR Subramanian, AA Petersen, ... Journal of the American Chemical Society 141 (16), 6519-6526, 2019 | 55 | 2019 |
| Pseudouridine modification inhibits muscleblind-like 1 (MBNL1) binding to CCUG repeats and minimally structured RNA through reduced RNA flexibility E deLorimier, MN Hinman, J Copperman, K Datta, M Guenza, ... Journal of Biological Chemistry 292 (10), 4350-4357, 2017 | 51 | 2017 |
| Modifications to toxic CUG RNAs induce structural stability, rescue mis-splicing in a myotonic dystrophy cell model and reduce toxicity in a myotonic dystrophy zebrafish model E deLorimier, LA Coonrod, J Copperman, A Taber, EE Reister, K Sharma, ... Nucleic acids research 42 (20), 12768-12778, 2014 | 40 | 2014 |
| WESTPA 2.0: High-performance upgrades for weighted ensemble simulations and analysis of longer-timescale applications JD Russo, S Zhang, JMG Leung, AT Bogetti, JP Thompson, AJ DeGrave, ... Journal of Chemical Theory and Computation 18 (2), 638-649, 2022 | 34 | 2022 |
| Accelerated estimation of long-timescale kinetics from weighted ensemble simulation via non-Markovian “microbin” analysis J Copperman, DM Zuckerman Journal of chemical theory and computation 16 (11), 6763-6775, 2020 | 32 | 2020 |
| A coarse-grained langevin equation for protein dynamics: Global anisotropy and a mode approach to local complexity JT Copperman, MG Guenza Biophysical Journal 108 (2), 378a, 2015 | 20 | 2015 |
| Predicting protein dynamics from structural ensembles J Copperman, MG Guenza The Journal of chemical physics 143 (24), 2015 | 17 | 2015 |
| Mode localization in the cooperative dynamics of protein recognition JT Copperman, MG Guenza Biophysical Journal 110 (3), 54a, 2016 | 15 | 2016 |
| Accelerated estimation of long-timescale kinetics by combining weighted ensemble simulation with Markov model “microstates” using non-Markovian theory JT Copperman, DM Zuckerman Biophysical Journal 118 (3), 180a, 2020 | 9 | 2020 |
| Universality and specificity in protein fluctuation dynamics J Copperman, M Dinpajooh, ER Beyerle, MG Guenza Physical Review Letters 119 (15), 158101, 2017 | 9 | 2017 |
| Universality and specificity in protein fluctuation dynamics J Copperman, M Dinpajooh, ER Beyerle, MG Guenza Physical Review Letters 119 (15), 158101, 2017 | 9 | 2017 |
| Weighted ensemble: Recent mathematical developments D Aristoff, J Copperman, G Simpson, RJ Webber, DM Zuckerman The Journal of Chemical Physics 158 (1), 2023 | 8 | 2023 |
| Morphodynamical cell state description via live-cell imaging trajectory embedding J Copperman, SM Gross, YH Chang, LM Heiser, DM Zuckerman Communications Biology 6 (1), 484, 2023 | 6 | 2023 |
| Transient probability currents provide upper and lower bounds on non-equilibrium steady-state currents in the Smoluchowski picture J Copperman, D Aristoff, DE Makarov, G Simpson, DM Zuckerman The Journal of chemical physics 151 (17), 2019 | 6 | 2019 |
| Iterative trajectory reweighting for estimation of equilibrium and non-equilibrium observables JD Russo, J Copperman, DM Zuckerman arXiv preprint arXiv:2006.09451, 2020 | 5 | 2020 |
| Unbiased estimation of equilibrium, rates, and committors from Markov state model analysis JD Russo, J Copperman, D Aristoff, G Simpson, DM Zuckerman arXiv preprint arXiv:2105.13402, 2021 | 3 | 2021 |
| Accelerated estimation of long-timescale kinetics by combining weighted ensemble simulation with markov model" microbins" using non-markovian theory J Copperman, DM Zuckerman Elsevier (Singapore) Pte Ltd, 2019 | 2 | 2019 |
