| The quantitative and condition-dependent Escherichia coli proteome A Schmidt, K Kochanowski, S Vedelaar, E Ahrné, B Volkmer, L Callipo, ... Nature biotechnology 34 (1), 104-110, 2016 | 799 | 2016 |
| Large-Scale Quantitative Assessment of Different In-Solution Protein Digestion Protocols Reveals Superior Cleavage Efficiency of Tandem Lys-C/Trypsin Proteolysis over Trypsin … T Glatter, C Ludwig, E Ahrné, R Aebersold, AJR Heck, A Schmidt Journal of Proteome Research 11 (11), 5145-5156, 2012 | 367 | 2012 |
| Critical assessment of proteome‐wide label‐free absolute abundance estimation strategies E Ahrné, L Molzahn, T Glatter, A Schmidt Proteomics 13 (17), 2567-2578, 2013 | 223 | 2013 |
| Targeted combinatorial alternative splicing generates brain region-specific repertoires of neurexins D Schreiner, TM Nguyen, G Russo, S Heber, A Patrignani, E Ahrné, ... Neuron 84 (2), 386-398, 2014 | 212 | 2014 |
| Protein synthesis rates and ribosome occupancies reveal determinants of translation elongation rates A Riba, N Di Nanni, N Mittal, E Arhné, A Schmidt, M Zavolan Proceedings of the national academy of sciences 116 (30), 15023-15032, 2019 | 192 | 2019 |
| Evaluation and improvement of quantification accuracy in isobaric mass tag-based protein quantification experiments E Ahrné, T Glatter, C Viganò, C Schubert, EA Nigg, A Schmidt Journal of proteome research 15 (8), 2537-2547, 2016 | 144 | 2016 |
| Unrestricted identification of modified proteins using MS/MS E Ahrné, M Müller, F Lisacek Proteomics 10 (4), 671-686, 2010 | 102 | 2010 |
| Comparison of different sample preparation protocols reveals lysis buffer-specific extraction biases in gram-negative bacteria and human cells T Glatter, E Ahrné, A Schmidt Journal of proteome research 14 (11), 4472-4485, 2015 | 83 | 2015 |
| Systems-level overview of host protein phosphorylation during Shigella flexneri infection revealed by phosphoproteomics C Schmutz, E Ahrné, CA Kasper, T Tschon, I Sorg, RF Dreier, A Schmidt, ... Molecular & Cellular Proteomics 12 (10), 2952-2968, 2013 | 71 | 2013 |
| Quantitative isoform-profiling of highly diversified recognition molecules D Schreiner, J Simicevic, E Ahrné, A Schmidt, P Scheiffele Elife 4, e07794, 2015 | 68 | 2015 |
| QuickMod: a tool for open modification spectrum library searches E Ahrné, F Nikitin, F Lisacek, M Müller Journal of proteome research 10 (7), 2913-2921, 2011 | 66 | 2011 |
| Evaluation of data-dependent and-independent mass spectrometric workflows for sensitive quantification of proteins and phosphorylation sites M Bauer, E Ahrné, AP Baron, T Glatter, LL Fava, A Santamaria, EA Nigg, ... Journal of proteome research 13 (12), 5973-5988, 2014 | 61 | 2014 |
| The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases SIB Swiss Institute of Bioinformatics Members Nucleic acids research 44 (D1), D27-D37, 2016 | 51 | 2016 |
| Quantitative proteomic and phosphoproteomic comparison of human colon cancer DLD-1 cells differing in ploidy and chromosome stability C Viganó, C von Schubert, E Ahrné, A Schmidt, T Lorber, L Bubendorf, ... Molecular biology of the cell 29 (9), 1031-1047, 2018 | 50 | 2018 |
| A simple workflow to increase MS2 identification rate by subsequent spectral library search E Ahrné, A Masselot, PA Binz, M Müller, F Lisacek Proteomics 9 (6), 1731-1736, 2009 | 43 | 2009 |
| Extensive mass spectrometry-based analysis of the fission yeast proteome: the Schizosaccharomyces pombe PeptideAtlas J Gunaratne, A Schmidt, A Quandt, SP Neo, ÖS Saraç, T Gracia, ... Molecular & Cellular Proteomics 12 (6), 1741-1751, 2013 | 40 | 2013 |
| PAX8 and MECOM are interaction partners driving ovarian cancer M Bleu, F Mermet-Meillon, V Apfel, L Barys, L Holzer, M Bachmann Salvy, ... Nature communications 12 (1), 2442, 2021 | 36 | 2021 |
| An improved method for the construction of decoy peptide MS/MS spectra suitable for the accurate estimation of false discovery rates E Ahrné, Y Ohta, F Nikitin, A Scherl, F Lisacek, M Müller Proteomics 11 (20), 4085-4095, 2011 | 32 | 2011 |
| Deuterium induces a distinctive Escherichia coli proteome that correlates with the reduction in growth rate C Opitz, E Ahrné, KN Goldie, A Schmidt, S Grzesiek Journal of Biological Chemistry 294 (7), 2279-2292, 2019 | 25 | 2019 |
| Global ion suppression limits the potential of mass spectrometry based phosphoproteomics RF Dreier, E Ahrné, P Broz, A Schmidt Journal of proteome research 18 (1), 493-507, 2018 | 22 | 2018 |
Alexander SchmidtBiozentrum, University of BaselVerified email at unibas.ch
