Andrew Adey
Andrew Adey
Assistant Professor of Molecular & Medical Genetics, Oregon Health & Science University
Verified email at ohsu.edu - Homepage
TitleCited byYear
Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing
DA Cusanovich, R Daza, A Adey, HA Pliner, L Christiansen, ...
Science 348 (6237), 910-914, 2015
3532015
Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions
JN Burton, A Adey, RP Patwardhan, R Qiu, JO Kitzman, J Shendure
Nature biotechnology 31 (12), 1119, 2013
3202013
Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition
A Adey, HG Morrison, X Xun, JO Kitzman, EH Turner, B Stackhouse, ...
Genome biology 11 (12), R119, 2010
3182010
Decoding long nanopore sequencing reads of natural DNA
AH Laszlo, IM Derrington, BC Ross, H Brinkerhoff, A Adey, IC Nova, ...
Nature biotechnology 32 (8), 829, 2014
2722014
Comprehensive single-cell transcriptional profiling of a multicellular organism
J Cao, JS Packer, V Ramani, DA Cusanovich, C Huynh, R Daza, X Qiu, ...
Science 357 (6352), 661-667, 2017
2442017
The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line
A Adey, JN Burton, JO Kitzman, JB Hiatt, AP Lewis, BK Martin, R Qiu, ...
Nature 500 (7461), 207, 2013
2342013
Haplotype-resolved genome sequencing of a Gujarati Indian individual
JO Kitzman, AP MacKenzie, A Adey, JB Hiatt, RP Patwardhan, ...
Nature biotechnology 29 (1), 59, 2011
2342011
Validation and implementation of targeted capture and sequencing for the detection of actionable mutation, copy number variation, and gene rearrangement in clinical cancer …
CC Pritchard, SJ Salipante, K Koehler, C Smith, S Scroggins, B Wood, ...
The Journal of Molecular Diagnostics 16 (1), 56-67, 2014
1892014
Haplotype-resolved whole-genome sequencing by contiguity-preserving transposition and combinatorial indexing
S Amini, D Pushkarev, L Christiansen, E Kostem, T Royce, C Turk, ...
Nature genetics 46 (12), 1343, 2014
1522014
megaTALs: a rare-cleaving nuclease architecture for therapeutic genome engineering
S Boissel, J Jarjour, A Astrakhan, A Adey, A Gouble, P Duchateau, ...
Nucleic acids research 42 (4), 2591-2601, 2013
1482013
Haplotype-resolved genome sequencing: experimental methods and applications
MW Snyder, A Adey, JO Kitzman, J Shendure
Nature Reviews Genetics 16 (6), 344, 2015
972015
Ultra-low-input, tagmentation-based whole-genome bisulfite sequencing
A Adey, J Shendure
Genome research 22 (6), 1139-1143, 2012
922012
Massively parallel contiguity mapping
JA Shendure, JJ Schwartz, AC Adey, C li Lee, JB Hiatt, JO Kitzman, ...
US Patent App. 13/513,309, 2013
792013
Sequencing thousands of single-cell genomes with combinatorial indexing
SA Vitak, KA Torkenczy, JL Rosenkrantz, AJ Fields, L Christiansen, ...
Nature methods 14 (3), 302, 2017
762017
In vitro, long-range sequence information for de novo genome assembly via transposase contiguity
A Adey, JO Kitzman, JN Burton, R Daza, A Kumar, L Christiansen, ...
Genome research 24 (12), 2041-2049, 2014
692014
Joint profiling of chromatin accessibility and gene expression in thousands of single cells
J Cao, DA Cusanovich, V Ramani, D Aghamirzaie, HA Pliner, AJ Hill, ...
Science 361 (6409), 1380-1385, 2018
682018
Tagmentation-based whole-genome bisulfite sequencing
Q Wang, L Gu, A Adey, B Radlwimmer, W Wang, V Hovestadt, M Bähr, ...
Nature protocols 8 (10), 2022, 2013
682013
Deep sequencing of multiple regions of glial tumors reveals spatial heterogeneity for mutations in clinically relevant genes
A Kumar, EA Boyle, M Tokita, AM Mikheev, MC Sanger, E Girard, ...
Genome biology 15 (12), 530, 2014
422014
Cicero predicts cis-regulatory DNA Interactions from single-cell chromatin accessibility data
HA Pliner, JS Packer, JL McFaline-Figueroa, DA Cusanovich, RM Daza, ...
Molecular cell 71 (5), 858-871. e8, 2018
402018
Highly scalable generation of DNA methylation profiles in single cells
RM Mulqueen, D Pokholok, SJ Norberg, KA Torkenczy, AJ Fields, D Sun, ...
Nature biotechnology 36 (5), 428, 2018
382018
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