| One step forward for reducing false positive and false negative compound identifications from mass spectrometry metabolomics data: new algorithms for constructing extracted ion … OD Myers, SJ Sumner, S Li, S Barnes, X Du Analytical chemistry 89 (17), 8696-8703, 2017 | 330 | 2017 |
| Integrative analysis of multimodal mass spectrometry data in MZmine 3 R Schmid, S Heuckeroth, A Korf, A Smirnov, O Myers, TS Dyrlund, ... Nature biotechnology 41 (4), 447-449, 2023 | 169 | 2023 |
| Detailed investigation and comparison of the XCMS and MZmine 2 chromatogram construction and chromatographic peak detection methods for preprocessing mass spectrometry … OD Myers, SJ Sumner, S Li, S Barnes, X Du Analytical Chemistry 89 (17), 8689-8695, 2017 | 165 | 2017 |
| Identification of cross-linked peptides after click-based enrichment using sequential collision-induced dissociation and electron transfer dissociation tandem mass spectrometry SM Chowdhury, X Du, N Tolic, S Wu, RJ Moore, MU Mayer, RD Smith, ... Analytical chemistry 81 (13), 5524-5532, 2009 | 114 | 2009 |
| Training in metabolomics research. I. Designing the experiment, collecting and extracting samples and generating metabolomics data S Barnes, HP Benton, K Casazza, SJ Cooper, X Cui, X Du, J Engler, ... Journal of Mass Spectrometry 51 (7), 461-475, 2016 | 109 | 2016 |
| Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data AA Aksenov, I Laponogov, Z Zhang, SLF Doran, I Belluomo, D Veselkov, ... Nature biotechnology 39 (2), 169-173, 2021 | 96 | 2021 |
| Spectral deconvolution for gas chromatography mass spectrometry-based metabolomics: current status and future perspectives X Du, SH Zeisel Computational and structural biotechnology journal 4 (5), e201301013, 2013 | 96 | 2013 |
| Comparative proteomics of human monkeypox and vaccinia intracellular mature and extracellular enveloped virions NP Manes, RD Estep, HM Mottaz, RJ Moore, TRW Clauss, ME Monroe, ... Journal of proteome research 7 (3), 960-968, 2008 | 92 | 2008 |
| The PHD and chromo domains regulate the ATPase activity of the human chromatin remodeler CHD4 AA Watson, P Mahajan, HDT Mertens, MJ Deery, W Zhang, P Pham, X Du, ... Journal of molecular biology 422 (1), 3-17, 2012 | 90 | 2012 |
| ADAP-GC 2.0: deconvolution of coeluting metabolites from GC/TOF-MS data for metabolomics studies Y Ni, Y Qiu, W Jiang, K Suttlemyre, M Su, W Zhang, W Jia, X Du Analytical chemistry 84 (15), 6619-6629, 2012 | 83 | 2012 |
| ADAP-GC 3.0: improved peak detection and deconvolution of co-eluting metabolites from GC/TOF-MS data for metabolomics studies Y Ni, M Su, Y Qiu, W Jia, X Du Analytical chemistry 88 (17), 8802-8811, 2016 | 71 | 2016 |
| An automated data analysis pipeline for GC− TOF− MS metabonomics studies W Jiang, Y Qiu, Y Ni, M Su, W Jia, X Du Journal of proteome research 9 (11), 5974-5981, 2010 | 68 | 2010 |
| Training in metabolomics research. II. Processing and statistical analysis of metabolomics data, metabolite identification, pathway analysis, applications of metabolomics and … S Barnes, HP Benton, K Casazza, SJ Cooper, X Cui, X Du, J Engler, ... Journal of mass spectrometry 51 (8), 535-548, 2016 | 65 | 2016 |
| Xlink-identifier: an automated data analysis platform for confident identifications of chemically cross-linked peptides using tandem mass spectrometry X Du, SM Chowdhury, NP Manes, S Wu, MU Mayer, JN Adkins, ... Journal of proteome research 10 (3), 923-931, 2011 | 62 | 2011 |
| ADAP-GC 4.0: application of clustering-assisted multivariate curve resolution to spectral deconvolution of gas chromatography–mass spectrometry metabolomics data A Smirnov, Y Qiu, W Jia, DI Walker, DP Jones, X Du Analytical chemistry 91 (14), 9069-9077, 2019 | 61 | 2019 |
| Metabolomics data preprocessing using ADAP and MZmine 2 X Du, A Smirnov, T Pluskal, W Jia, S Sumner Computational Methods and Data Analysis for Metabolomics, 25-48, 2020 | 53 | 2020 |
| Discovery of mouse spleen signaling responses to anthrax using label-free quantitative phosphoproteomics via mass spectrometry NP Manes, L Dong, W Zhou, X Du, N Reghu, AC Kool, D Choi, CL Bailey, ... Molecular & Cellular Proteomics 10 (3), 2011 | 44 | 2011 |
| A practical guide to metabolomics software development HY Chang, SM Colby, X Du, JD Gomez, MJ Helf, K Kechris, ... Analytical chemistry 93 (4), 1912-1923, 2021 | 40 | 2021 |
| Metabolic reprogramming by folate restriction leads to a less aggressive cancer phenotype Z Ashkavand, C O'Flanagan, M Hennig, X Du, SD Hursting, SA Krupenko Molecular cancer research 15 (2), 189-200, 2017 | 39 | 2017 |
| Protein structural analysis via mass spectrometry-based proteomics A Artigues, OW Nadeau, MA Rimmer, MT Villar, X Du, AW Fenton, ... Modern Proteomics–Sample Preparation, Analysis and Practical Applications …, 2016 | 37 | 2016 |
