Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap T Cordier, L Alonso‐Sáez, L Apothéloz‐Perret‐Gentil, E Aylagas, ... Molecular Ecology 30 (13), 2937-2958, 2021 | 229 | 2021 |
Wanted dead or alive? Using metabarcoding of environmental DNA and RNA to distinguish living assemblages for biosecurity applications X Pochon, A Zaiko, LM Fletcher, O Laroche, SA Wood PloS one 12 (11), e0187636, 2017 | 201 | 2017 |
A comparison of droplet digital polymerase chain reaction (PCR), quantitative PCR and metabarcoding for species‐specific detection in environmental DNA SA Wood, X Pochon, O Laroche, U von Ammon, J Adamson, A Zaiko Molecular Ecology Resources 19 (6), 1407-1419, 2019 | 147 | 2019 |
A cross-taxa study using environmental DNA/RNA metabarcoding to measure biological impacts of offshore oil and gas drilling and production operations O Laroche, SA Wood, LA Tremblay, JI Ellis, G Lear, X Pochon Marine Pollution Bulletin 127, 97-107, 2018 | 123 | 2018 |
Metabarcoding monitoring analysis: the pros and cons of using co-extracted environmental DNA and RNA data to assess offshore oil production impacts on benthic communities O Laroche, SA Wood, LA Tremblay, G Lear, JI Ellis, X Pochon PeerJ 5, e3347, 2017 | 120 | 2017 |
First evaluation of foraminiferal metabarcoding for monitoring environmental impact from an offshore oil drilling site O Laroche, SA Wood, LA Tremblay, JI Ellis, F Lejzerowicz, J Pawlowski, ... Marine Environmental Research 120, 225-235, 2016 | 98 | 2016 |
Linking environmental DNA and RNA for improved detection of the marine invasive fanworm Sabella spallanzanii U Von Ammon, SA Wood, O Laroche, A Zaiko, SD Lavery, GJ Inglis, ... Frontiers in Marine Science 6, 483759, 2019 | 72 | 2019 |
Combining morpho-taxonomy and metabarcoding enhances the detection of non-indigenous marine pests in biofouling communities U Ammon, SA Wood, O Laroche, A Zaiko, L Tait, S Lavery, GJ Inglis, ... Scientific Reports 8 (1), 16290, 2018 | 72 | 2018 |
The impact of artificial surfaces on marine bacterial and eukaryotic biofouling assemblages: A high-throughput sequencing analysis U von Ammon, SA Wood, O Laroche, A Zaiko, L Tait, S Lavery, G Inglis, ... Marine Environmental Research 133, 57-66, 2018 | 62 | 2018 |
Environmental DNA surveys detect distinct metazoan communities across abyssal plains and seamounts in the western Clarion Clipperton Zone O Laroche, O Kersten, CR Smith, E Goetze Molecular Ecology 29 (23), 4588-4604, 2020 | 61 | 2020 |
Comparing sediment DNA extraction methods for assessing organic enrichment associated with marine aquaculture JK Pearman, NB Keeley, SA Wood, O Laroche, A Zaiko, ... PeerJ 8, e10231, 2020 | 44 | 2020 |
From sea surface to seafloor: A benthic allochthonous eDNA survey for the abyssal ocean O Laroche, O Kersten, CR Smith, E Goetze Frontiers in Marine Science 7, 682, 2020 | 40 | 2020 |
Metabarcoding as a tool to enhance marine surveillance of nonindigenous species in tropical harbors: A case study in Tahiti JK Pearman, U Von Ammon, O Laroche, A Zaiko, SA Wood, M Zubia, ... Environmental DNA 3 (1), 173-189, 2021 | 34 | 2021 |
Preliminary analysis of New Zealand scampi (Metanephrops challengeri) diet using metabarcoding AL van der Reis, O Laroche, AG Jeffs, SD Lavery PeerJ 6, e5641, 2018 | 33 | 2018 |
Effects of water temperature on the gut microbiome and physiology of Chinook salmon (Oncorhynchus tshawytscha) reared in a freshwater recirculating system K Steiner, O Laroche, SP Walker, JE Symonds Aquaculture 560, 738529, 2022 | 32 | 2022 |
Incorporating molecular-based functional and co-occurrence network properties into benthic marine impact assessments O Laroche, X Pochon, LA Tremblay, JI Ellis, G Lear, SA Wood FEMS Microbiology Ecology 94 (11), fiy167, 2018 | 29 | 2018 |
The microbiome of Chinook salmon (Oncorhynchus tshawytscha) in a recirculation aquaculture system K Steiner, K Heasman, O Laroche, X Pochon, M Preece, JP Bowman, ... Aquaculture 534, 736227, 2021 | 27 | 2021 |
Understanding bacterial communities for informed biosecurity and improved larval survival in Pacific oysters O Laroche, JE Symonds, KF Smith, JC Banks, H Mae, JP Bowman, ... Aquaculture 497, 164-173, 2018 | 25 | 2018 |
Global trends of benthic bacterial diversity and community composition along organic enrichment gradients of salmon farms L Frühe, V Dully, D Forster, NB Keeley, O Laroche, X Pochon, S Robinson, ... Frontiers in Microbiology 12, 637811, 2021 | 22 | 2021 |
Elucidating biodiversity shifts in ballast water tanks during a cross-latitudinal transfer: complementary insights from molecular analyses A Zaiko, SA Wood, X Pochon, L Biessy, O Laroche, P Croot, ... Environmental Science & Technology 54 (13), 8443-8454, 2020 | 20 | 2020 |