Jürgen Pahle
Jürgen Pahle
Independent Group Leader, Heidelberg University, Germany
Verified email at bioquant.uni-heidelberg.de - Homepage
TitleCited byYear
COPASI—a complex pathway simulator
S Hoops, S Sahle, R Gauges, C Lee, J Pahle, N Simus, M Singhal, L Xu, ...
Bioinformatics 22 (24), 3067-3074, 2006
21112006
Biochemical simulations: stochastic, approximate stochastic and hybrid approaches
J Pahle
Briefings in bioinformatics 10 (1), 53-64, 2009
1652009
Transition from stochastic to deterministic behavior in calcium oscillations
U Kummer, B Krajnc, J Pahle, AK Green, CJ Dixon, M Marhl
Biophysical journal 89 (3), 1603-1611, 2005
932005
An in vivo control map for the eukaryotic mRNA translation machinery
H Firczuk, S Kannambath, J Pahle, A Claydon, R Beynon, J Duncan, ...
Molecular systems biology 9 (1), 2013
762013
Efficient discovery of anti-inflammatory small-molecule combinations using evolutionary computing
BG Small, BW McColl, R Allmendinger, J Pahle, G López-Castejón, ...
Nature Chemical Biology 7 (12), 902, 2011
642011
Information transfer in signaling pathways: a study using coupled simulated and experimental data
J Pahle, AK Green, CJ Dixon, U Kummer
BMC bioinformatics 9 (1), 139, 2008
502008
Zinc depletion regulates the processing and secretion of IL-1 β
H Summersgill, H England, G Lopez-Castejon, CB Lawrence, ...
Cell death & disease 5 (1), e1040-e1040, 2014
432014
Biochemical fluctuations, optimisation and the linear noise approximation
J Pahle, JD Challenger, P Mendes, AJ McKane
BMC systems biology 6 (1), 86, 2012
242012
Simulation of biochemical networks using copasi-a complex pathway simulator
S Sahle, R Gauges, J Pahle, N Simus, U Kummer, S Hoops, C Lee, ...
Proceedings of the 2006 Winter Simulation Conference, 1698-1706, 2006
222006
COPASI and its applications in biotechnology
FT Bergmann, S Hoops, B Klahn, U Kummer, P Mendes, J Pahle, S Sahle
Journal of biotechnology 261, 215-220, 2017
172017
Approaches to complexity reduction in a systems biology research environment (SYCAMORE)
I Surovtsova, S Sahle, J Pahle, U Kummer
Proceedings of the 2006 Winter Simulation Conference, 1683-1689, 2006
152006
Multi-compartment linear noise approximation
JD Challenger, AJ McKane, J Pahle
Journal of Statistical Mechanics: Theory and Experiment 2012 (11), P11010, 2012
132012
Exploiting intrinsic fluctuations to identify model parameters
C Zimmer, S Sahle, J Pahle
IET systems biology 9 (2), 64-73, 2015
122015
Stochastic simulation and analysis of biochemical networks
J Pahle
Humboldt-Universität zu Berlin, Mathematisch-Naturwissenschaftliche Fakultät I, 2008
42008
PKC‐mediated inhibitory feedback of the cholecystokinin 1 receptor controls the shape of oscillatory Ca2+ signals
PHGM Willems, J Pahle, XL Stalpers, D Mugahid, A Nikolaew, ...
The FEBS journal 282 (11), 2187-2201, 2015
32015
Requirements for band-pass activation of Ca2+-sensitive proteins such as NFAT
A Schoch, J Pahle
Biophysical chemistry 245, 41-52, 2019
22019
Data management in computational systems biology: exploring standards, tools, databases, and packaging best practices
NJ Stanford, M Scharm, PD Dobson, M Golebiewski, M Hucka, ...
Yeast Systems Biology, 285-314, 2019
12019
Zinc-depletion activates processing and secretion of IL-1β by inflammasome-dependent and independent mechanisms: P0326
D Brough, H Summersgill, N Luheshi, C Lawrence, J Pahle, P Mendes
Immunology 137, 2012
2012
Zinc depletion induces interleukin-1β processing and release: 266
H Summersgill, C Lawrence, G Lopez-Castejon, N Luheshi, D Corbett, ...
Immunology 135, 2011
2011
Oscillatory Simulation of Mitral and Granule Cell Behavior in the Olfactory Bulb
J Pahle, I Valova, G Georgiev, N Georgieva
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Articles 1–20