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Veronika Dubinkina
Veronika Dubinkina
Gladstone Institutes, UCSF
Verified email at phystech.edu
Title
Cited by
Cited by
Year
Links of gut microbiota composition with alcohol dependence syndrome and alcoholic liver disease
VB Dubinkina, AV Tyakht, VY Odintsova, KS Yarygin, BA Kovarsky, ...
Microbiome 5, 1-14, 2017
3842017
Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis
VB Dubinkina, DS Ischenko, VI Ulyantsev, AV Tyakht, DG Alexeev
BMC bioinformatics 17, 1-11, 2016
932016
Multiple stable states in microbial communities explained by the stable marriage problem
A Goyal, V Dubinkina, S Maslov
The ISME journal 12 (12), 2823-2834, 2018
832018
Ecology-guided prediction of cross-feeding interactions in the human gut microbiome
A Goyal, T Wang, V Dubinkina, S Maslov
Nature communications 12 (1), 1335, 2021
672021
Multistability and regime shifts in microbial communities explained by competition for essential nutrients
V Dubinkina, Y Fridman, PP Pandey, S Maslov
Elife 8, e49720, 2019
652019
MetaFast: fast reference-free graph-based comparison of shotgun metagenomic data
VI Ulyantsev, SV Kazakov, VB Dubinkina, AV Tyakht, DG Alexeev
Bioinformatics 32 (18), 2760-2767, 2016
642016
A cross-study analysis of drug response prediction in cancer cell lines
F Xia, J Allen, P Balaprakash, T Brettin, C Garcia-Cardona, A Clyde, ...
Briefings in bioinformatics 23 (1), bbab356, 2022
632022
Evidence for a multi-level trophic organization of the human gut microbiome
T Wang, A Goyal, V Dubinkina, S Maslov
PLoS computational biology 15 (12), e1007524, 2019
572019
Complementary resource preferences spontaneously emerge in diauxic microbial communities
Z Wang, A Goyal, V Dubinkina, AB George, T Wang, Y Fridman, S Maslov
Nature communications 12 (1), 6661, 2021
232021
Gut Microbiome-Host Metabolome Homeostasis upon Exposure to PFOS and GenX in Male Mice
F Rashid, V Dubinkina, S Ahmad, S Maslov, JMK Irudayaraj
Toxics 11 (3), 281, 2023
142023
Specific features of the enteric microbiota composition in patients with alcoholic liver cirrhosis
NV Shalikiani, IG Bakulin, VB Dubinkina, DS Ishchenko, DG Alexeev, ...
Terapevticheskii arkhiv 87 (12), 59-65, 2015
12*2015
Metagenomic analysis of taxonomic and functional changes in gut microbiota of patients with alcoholic dependence syndrome
VB Dubinkina, AV Tyakht, EN Ilina, DS Ischenko, BA Kovarsky, ...
Biomeditsinskaya khimiya 61 (6), 742-749, 2015
92015
Culturing of a complex gut microbial community in mucin-hydrogel carriers reveals strain-and gene-associated spatial organization
X Jin, FB Yu, J Yan, AM Weakley, V Dubinkina, X Meng, KS Pollard
Nature Communications 14 (1), 3510, 2023
72023
Bottlenecks, modularity, and the neural control of behavior
A Nande, V Dubinkina, R Ravasio, GH Zhang, GJ Berman
Frontiers in behavioral neuroscience 16, 835753, 2022
72022
Data on gut metagenomes of the patients with alcoholic dependence syndrome and alcoholic liver cirrhosis
AV Tyakht, VB Dubinkina, VY Odintsova, KS Yarygin, BA Kovarsky, ...
Data in brief 11, 98-102, 2017
62017
Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC
BJ Smith, C Zhao, V Dubinkina, X Jin, J Moltzau-Anderson, K Pollard
bioRxiv, 2024.04. 10.588779, 2024
32024
Alternative stable states in a model of microbial community limited by multiple essential nutrients
V Dubinkina, Y Fridman, P Pandey, S Maslov
arXiv preprint arXiv:1810.04726, 2018
32018
FUN-PROSE: A deep learning approach to predict condition-specific gene expression in fungi
A Nambiar, V Dubinkina, S Liu, S Maslov
PLoS computational biology 19 (11), e1011563, 2023
22023
P794 Alterations of intestinal microbiota in ulcerative colitis
N Danilova, S Abdulkhakov, T Grigoryeva, V Dubinkina, V Odintsova, ...
Journal of Crohn's and Colitis 11 (suppl_1), S486-S486, 2017
22017
A transcriptomic atlas of acute stress response to low pH in multiple Issatchenkia orientalis strains
V Dubinkina, S Bhogale, PH Hsieh, P Dibaeinia, A Nambiar, S Maslov, ...
Microbiology Spectrum 12 (1), e02536-23, 2024
2024
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Articles 1–20