Bo Li
Bo Li
Assistant Investigator, Center for Immunology & Inflammatory Diseases, Massachusetts General
Verified email at - Homepage
TitleCited byYear
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
B Li, CN Dewey
BMC bioinformatics 12 (1), 323, 2011
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ...
Nature protocols 8 (8), 1494, 2013
RNA-Seq gene expression estimation with read mapping uncertainty
B Li, V Ruotti, RM Stewart, JA Thomson, CN Dewey
Bioinformatics 26 (4), 493-500, 2009
Evaluation of de novo transcriptome assemblies from RNA-Seq data
B Li, N Fillmore, Y Bai, M Collins, JA Thomson, R Stewart, CN Dewey
Genome biology 15 (12), 553, 2014
Discovering transcription factor binding sites in highly repetitive regions of genomes with multi-read analysis of ChIP-Seq data
D Chung, PF Kuan, B Li, R Sanalkumar, K Liang, EH Bresnick, C Dewey, ...
PLoS computational biology 7 (7), e1002111, 2011
STAR-Fusion: fast and accurate fusion transcript detection from RNA-Seq
B Haas, A Dobin, N Stransky, B Li, X Yang, T Tickle, A Bankapur, ...
BioRxiv, 120295, 2017
PROBer provides a general toolkit for analyzing sequencing-based toeprinting assays
B Li, A Tambe, S Aviran, L Pachter
Cell systems 4 (5), 568-574. e7, 2017
Metrics for rapid quality control in RNA structure probing experiments
K Choudhary, NP Shih, F Deng, M Ledda, B Li, S Aviran
Bioinformatics 32 (23), 3575-3583, 2016
Perm-seq: mapping protein-DNA interactions in segmental duplication and highly repetitive regions of genomes with prior-enhanced read mapping
X Zeng, B Li, R Welch, C Rojo, Y Zheng, CN Dewey, S Keleş
PLoS computational biology 11 (10), e1004491, 2015
Computational analysis of RNA-Seq data in the absence of aknown genome
B Li
The University of Wisconsin-Madison, 2013
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