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Paul Theodor Pyl
Paul Theodor Pyl
Department of Laboratory Medicine, National Bioinformatics Infrastructure Sweden, Science for Life
Verified email at scilifelab.se
Title
Cited by
Cited by
Year
HTSeq—a Python framework to work with high-throughput sequencing data
S Anders, PT Pyl, W Huber
bioinformatics 31 (2), 166-169, 2015
192222015
Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer
J Wirbel, PT Pyl, E Kartal, K Zych, A Kashani, A Milanese, JS Fleck, ...
Nature medicine 25 (4), 679-689, 2019
8862019
The genomic and transcriptomic landscape of a HeLa cell line
JJM Landry, PT Pyl, T Rausch, T Zichner, MM Tekkedil, AM Stütz, A Jauch, ...
G3: Genes, Genomes, Genetics 3 (8), 1213-1224, 2013
6132013
Recovery of gut microbiota of healthy adults following antibiotic exposure
A Palleja, KH Mikkelsen, SK Forslund, A Kashani, KH Allin, T Nielsen, ...
Nature microbiology 3 (11), 1255-1265, 2018
6092018
Analysing high-throughput sequencing data in Python with HTSeq 2.0
GH Putri, S Anders, PT Pyl, JE Pimanda, F Zanini
Bioinformatics 38 (10), 2943-2945, 2022
4232022
HTSeq: Analysing high-throughput sequencing data with Python
S Anders, PT Pyl, W Huber
1802010
Proteogenomic workflow reveals molecular phenotypes related to breast cancer mammographic appearance
T De Marchi, PT Pyl, M Sjostrom, S Klasson, H Sartor, L Tran, G Pekar, ...
Journal of Proteome Research 20 (5), 2983-3001, 2021
152021
Cerebrospinal fluid proteome maps detect pathogen-specific host response patterns in meningitis
A Bakochi, T Mohanty, PT Pyl, CA Gueto-Tettay, L Malmström, A Linder, ...
Elife 10, e64159, 2021
142021
Homozygous carriers of the TCF7L2 rs7903146 T-allele show altered postprandial response in triglycerides and triglyceride-rich lipoproteins
L Engelbrechtsen, TH Hansen, Y Mahendran, P Pyl, E Andersson, ...
Scientific Reports 7 (1), 43128, 2017
132017
h5vc: scalable nucleotide tallies with HDF5
PT Pyl, J Gehring, B Fischer, W Huber
Bioinformatics 30 (10), 1464-1466, 2014
72014
HTSeq—A Python framework to work with high-throughput sequencing data. bioRxiv. 2014
S Anders, PT Pyl, W Huber
Preprint, 0
7
Analysis of nonleukemic cellular subcompartments reconstructs clonal evolution of acute myeloid leukemia and identifies therapy‐resistant preleukemic clones
BR Saeed, L Manta, S Raffel, PT Pyl, EC Buss, W Wang, V Eckstein, ...
International journal of cancer 148 (11), 2825-2838, 2021
52021
Asymptomatic multiple myeloma-background of progression, evolution, and prognosis
A Seckinger, A Jauch, M Emde, S Beck, M Mohr, M Granzow, T Hielscher, ...
Blood, The Journal of the American Society of Hematology 128 (22), 235-235, 2016
32016
Proteogenomics decodes the evolution of human ipsilateral breast cancer
T De Marchi, PT Pyl, M Sjöström, SE Reinsbach, S DiLorenzo, B Nystedt, ...
Communications Biology 6 (1), 139, 2023
22023
PVT1 interacts with polycomb repressive complex 2 to suppress genomic regions with pro-apoptotic and tumour suppressor functions in multiple myeloma
P Nylund, B Garrido-Zabala, AA Párraga, L Vasquez, PT Pyl, GM Harinck, ...
Haematologica 109 (2), 567, 2024
12024
Clonal heterogeneity in acute myeloid leukemia
L Manta, B Saeed, L Poisa-Beiro, P Pyl, T Stiehl, K Barth-Miesala, ...
ONCOLOGY RESEARCH AND TREATMENT 40, 50-51, 2017
12017
High-level clustering of integration sites in proto-oncogenes and leukemogenesis in gamma-retroviral WAS gene therapy
A Paruzynski, K Boztug, CJ Braun, PT Pyl, C Ball, A Nowrouzi, A Arens, ...
HUMAN GENE THERAPY 23 (10), A33-A34, 2012
12012
Incremental Index Structures
PT Pyl
Master's Thesis, 2009
12009
Quantification and profiling of early and late differentiation stage T-cells in mantle cell lymphoma reveals immunotherapeutic targets in subsets of patients
L Lokhande, D Nilsson, J de Matos Rodrigues, M Hassan, LM Olsson, ...
2024
Dual DNMT/EZH2 inhibition synergistically re-configures the epigenome and promotes anti-tumour effect in multiple myeloma
A Atienza Párraga, P Nylund, K Diamanti, B Garrido-Zabala, L Vasquez, ...
2023
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