Aleksandra A Kolodziejczyk
Aleksandra A Kolodziejczyk
International Institute of Molecular and Cell Biology
Verified email at - Homepage
Cited by
Cited by
Dysbiosis and the immune system
M Levy, AA Kolodziejczyk, CA Thaiss, E Elinav
Nature Reviews Immunology 17 (4), 219-232, 2017
The technology and biology of single-cell RNA sequencing
AA Kolodziejczyk, JK Kim, V Svensson, JC Marioni, SA Teichmann
Molecular cell 58 (4), 610-620, 2015
Accounting for technical noise in single-cell RNA-seq experiments
P Brennecke, S Anders, JK Kim, AA Kołodziejczyk, X Zhang, V Proserpio, ...
Nature methods 10 (11), 1093-1095, 2013
Diet–microbiota interactions and personalized nutrition
AA Kolodziejczyk, D Zheng, E Elinav
Nature Reviews Microbiology 17 (12), 742-753, 2019
Classification of low quality cells from single-cell RNA-seq data
T Ilicic, JK Kim, AA Kolodziejczyk, FO Bagger, DJ McCarthy, JC Marioni, ...
Genome biology 17, 1-15, 2016
Single cell RNA-sequencing of pluripotent states unlocks modular transcriptional variation
AA Kolodziejczyk, JK Kim, JCH Tsang, T Ilicic, J Henriksson, ...
Cell stem cell 17 (4), 471-485, 2015
The role of the microbiome in NAFLD and NASH
AA Kolodziejczyk, D Zheng, O Shibolet, E Elinav
EMBO molecular medicine 11 (2), e9302, 2019
Bile acids in glucose metabolism in health and disease
H Shapiro, AA Kolodziejczyk, D Halstuch, E Elinav
Journal of Experimental Medicine 215 (2), 383-396, 2018
Characterizing noise structure in single-cell RNA-seq distinguishes genuine from technical stochastic allelic expression
JK Kim, AA Kolodziejczyk, T Ilicic, SA Teichmann, JC Marioni
Nature communications 6 (1), 8687, 2015
Aging increases cell-to-cell transcriptional variability upon immune stimulation
CP Martinez-Jimenez, N Eling, HC Chen, CA Vallejos, AA Kolodziejczyk, ...
Science 355 (6332), 1433-1436, 2017
Establishment of mouse expanded potential stem cells
J Yang, DJ Ryan, W Wang, JCH Tsang, G Lan, H Masaki, X Gao, ...
Nature 550 (7676), 393-397, 2017
Single-cell RNA sequencing reveals T helper cells synthesizing steroids de novo to contribute to immune homeostasis
B Mahata, X Zhang, AA Kolodziejczyk, V Proserpio, L Haim-Vilmovsky, ...
Cell reports 7 (4), 1130-1142, 2014
Cell-type specialization is encoded by specific chromatin topologies
W Winick-Ng, A Kukalev, I Harabula, L Zea-Redondo, D Szabó, M Meijer, ...
Nature 599 (7886), 684-691, 2021
Acute liver failure is regulated by MYC-and microbiome-dependent programs
AA Kolodziejczyk, S Federici, N Zmora, G Mohapatra, M Dori-Bachash, ...
Nature medicine 26 (12), 1899-1911, 2020
Single-cell transcriptomic reconstruction reveals cell cycle and multi-lineage differentiation defects in Bcl11a-deficient hematopoietic stem cells
JCH Tsang, Y Yu, S Burke, F Buettner, C Wang, AA Kolodziejczyk, ...
Genome biology 16, 1-16, 2015
The spatiotemporal program of zonal liver regeneration following acute injury
S Ben-Moshe, T Veg, R Manco, S Dan, D Papinutti, A Lifshitz, ...
Cell Stem Cell 29 (6), 973-989. e10, 2022
Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression
G Kar, JK Kim, AA Kolodziejczyk, KN Natarajan, E Torlai Triglia, B Mifsud, ...
Nature communications 8 (1), 36, 2017
Gut microbiota modulates weight gain in mice after discontinued smoke exposure
L Fluhr, U Mor, AA Kolodziejczyk, M Dori-Bachash, A Leshem, S Itav, ...
Nature 600 (7890), 713-719, 2021
Commensal inter-bacterial interactions shaping the microbiota
L Kern, SK Abdeen, AA Kolodziejczyk, E Elinav
Current opinion in microbiology 63, 158-171, 2021
Global and targeted approaches to single-cell transcriptome characterization
AA Kolodziejczyk, T Lönnberg
Briefings in functional genomics 17 (4), 209-219, 2018
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Articles 1–20