David Baker
David Baker
Verified email at uw.edu - Homepage
TitleCited byYear
Protein structure prediction and structural genomics
D Baker, A Sali
Science 294 (5540), 93-96, 2001
18962001
Contact order, transition state placement and the refolding rates of single domain proteins
KW Plaxco, KT Simons, D Baker
Journal of molecular biology 277 (4), 985-994, 1998
15911998
Design of a novel globular protein fold with atomic-level accuracy
B Kuhlman, G Dantas, GC Ireton, G Varani, BL Stoddard, D Baker
science 302 (5649), 1364-1368, 2003
15862003
Protein structure prediction using Rosetta
CA Rohl, CEM Strauss, KMS Misura, D Baker
Methods in enzymology 383, 66-93, 2004
15012004
Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions
KT Simons, C Kooperberg, E Huang, D Baker
Journal of molecular biology 268 (1), 209-225, 1997
14261997
Predicting protein structures with a multiplayer online game
S Cooper, F Khatib, A Treuille, J Barbero, J Lee, M Beenen, A Leaver-Fay, ...
Nature 466 (7307), 756, 2010
12602010
Protein structure prediction and analysis using the Robetta server
DE Kim, D Chivian, D Baker
Nucleic acids research 32 (suppl_2), W526-W531, 2004
11642004
Kemp elimination catalysts by computational enzyme design
D Röthlisberger, O Khersonsky, AM Wollacott, L Jiang, J DeChancie, ...
Nature 453 (7192), 190, 2008
11312008
ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules
A Leaver-Fay, M Tyka, SM Lewis, OF Lange, J Thompson, R Jacak, ...
Methods in enzymology 487, 545-574, 2011
10792011
De novo computational design of retro-aldol enzymes
L Jiang, EA Althoff, FR Clemente, L Doyle, D Röthlisberger, A Zanghellini, ...
science 319 (5868), 1387-1391, 2008
10582008
Protein–protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations
JJ Gray, S Moughon, C Wang, O Schueler-Furman, B Kuhlman, CA Rohl, ...
Journal of molecular biology 331 (1), 281-299, 2003
9982003
A surprising simplicity to protein folding
D Baker
Nature 405 (6782), 39, 2000
9152000
Toward high-resolution de novo structure prediction for small proteins
P Bradley, KMS Misura, D Baker
Science 309 (5742), 1868-1871, 2005
9012005
Quantitative reactivity profiling predicts functional cysteines in proteomes
E Weerapana, C Wang, GM Simon, F Richter, S Khare, MBD Dillon, ...
Nature 468 (7325), 790, 2010
8682010
Pharmaco-metabonomic phenotyping and personalized drug treatment
TA Clayton, JC Lindon, O Cloarec, H Antti, C Charuel, G Hanton, ...
Nature 440 (7087), 1073, 2006
8342006
Native protein sequences are close to optimal for their structures
B Kuhlman, D Baker
Proceedings of the National Academy of Sciences 97 (19), 10383-10388, 2000
8132000
A simple physical model for binding energy hot spots in protein–protein complexes
T Kortemme, D Baker
Proceedings of the National Academy of Sciences 99 (22), 14116-14121, 2002
7962002
Improving physical realism, stereochemistry, and side‐chain accuracy in homology modeling: four approaches that performed well in CASP8
E Krieger, K Joo, J Lee, J Lee, S Raman, J Thompson, M Tyka, D Baker, ...
Proteins: Structure, Function, and Bioinformatics 77 (S9), 114-122, 2009
7752009
Macromolecular modeling with rosetta
R Das, D Baker
Annu. Rev. Biochem. 77, 363-382, 2008
7732008
Computational design of an enzyme catalyst for a stereoselective bimolecular Diels-Alder reaction
JB Siegel, A Zanghellini, HM Lovick, G Kiss, AR Lambert, JLS Clair, ...
Science 329 (5989), 309-313, 2010
7602010
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