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Felix Schlesinger
Felix Schlesinger
Verified email at illumina.com
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Year
STAR: ultrafast universal RNA-seq aligner
A Dobin, CA Davis, F Schlesinger, J Drenkow, C Zaleski, S Jha, P Batut, ...
Bioinformatics 29 (1), 15-21, 2013
373522013
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature, 2012
16483*2012
Landscape of transcription in human cells
S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ...
Nature 489 (7414), 101-108, 2012
54482012
Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications
X Chen, O Schulz-Trieglaff, R Shaw, B Barnes, F Schlesinger, M Källberg, ...
Bioinformatics 32 (8), 1220-1222, 2016
15182016
A user’s guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS Biol 9 (4), e1001046, 2011
14402011
Synthetic spike-in standards for RNA-seq experiments
L Jiang, F Schlesinger, CA Davis, Y Zhang, R Li, M Salit, TR Gingeras, ...
Genome research 21 (9), 1543-1551, 2011
7432011
The reality of pervasive transcription
MB Clark, PP Amaral, FJ Schlesinger, ME Dinger, RJ Taft, JL Rinn, ...
PLoS biology 9 (7), e1000625, 2011
5012011
Genome-Wide Association Study in Asian Populations Identifies Variants in ETS1 and WDFY4 Associated with Systemic Lupus Erythematosus
W Yang, N Shen, DQ Ye, Q Liu, Y Zhang, XX Qian, N Hirankarn, D Ying, ...
PLoS genetics 6 (2), e1000841, 2010
4582010
Comparative analysis of the transcriptome across distant species
MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng, JB Brown, ...
Nature 512 (7515), 445-448, 2014
3242014
Developmental validation of the MiSeq FGx forensic genomics system for targeted next generation sequencing in forensic DNA casework and database laboratories
AC Jäger, ML Alvarez, CP Davis, E Guzmán, Y Han, L Way, ...
Forensic Science International: Genetics 28, 52-70, 2017
2922017
Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster
X Deng, JB Hiatt, DK Nguyen, S Ercan, D Sturgill, LDW Hillier, ...
Nature genetics 43 (12), 1179-1185, 2011
2882011
ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions
E Dolzhenko, V Deshpande, F Schlesinger, P Krusche, R Petrovski, ...
Bioinformatics 35 (22), 4754-4756, 2019
2002019
Paragraph: a graph-based structural variant genotyper for short-read sequence data
S Chen, P Krusche, E Dolzhenko, RM Sherman, R Petrovski, ...
Genome biology 20, 1-13, 2019
1282019
De novo DNA demethylation and noncoding transcription define active intergenic regulatory elements
F Schlesinger, AD Smith, TR Gingeras, GJ Hannon, E Hodges
Genome research 23 (10), 1601-1614, 2013
702013
Ultrafast universal RNA-seq aligner., 2013, 29
A Dobin, CA Davis, F Schlesinger, J Drenkow, C Zaleski, S Jha, P Batut, ...
DOI: https://doi. org/10.1093/bioinformatics/bts635, 15-21, 0
55
Manta: rapid detection of structural variants and indels for clinical sequencing applications
X Chen, O Schulz-Trieglaff, R Shaw, B Barnes, F Schlesinger, AJ Cox, ...
bioRxiv, 024232, 2015
72015
Detection of novel fusion transcript VTI1A-CFAP46 in hepatocellular carcinoma
S Tsuge, B Saberi, Y Cheng, Z Wang, A Kim, H Luu, JM Abraham, ...
Gastrointestinal Tumors 6 (1-2), 11-27, 2019
32019
A scalable high-throughput method for RNA-seq analysis of thousands of single cells
K Taylor, L Watson, L Frenz, D Greiner, R Lebofsky, D Do, P Shah, ...
White Pap 1070, 2016-2013, 2017
32017
Abstract LB-329: Enhancing the resolution and accelerating the pace of translational fusion characterization in oncology by RNA sequencing
LC Watson, SM Gross, F Schlesinger, A Mai, M Kellogg, S Lee, C Attwooll, ...
Cancer Research 76 (14_Supplement), LB-329-LB-329, 2016
2016
Genome-wide association study in asian populations identifies variants in ETS1 and WDFY4 associated with systemic lupus erythematosus
V Kumar, HJ Westra, J Karjalainen, DV Zhernakova, T Esko, B Hrdlickova, ...
Nature, 2016
2016
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