Dario F. Marzella

20212022202320244 20 46 25

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Li C XueRadboud University Medical CenterVerified email at radboudumc.nl
Nicolas RenaudSection Head Natural Sciences & Engineering @ NL eScience CenterVerified email at esciencecenter.nl
Sonja GeorgievskaNetherlands eScience CenterVerified email at esciencecenter.nl
Farzaneh M. PariziRadboudUMCVerified email at radboudumc.nl
Daniel T. RademakerPostdoctoral Researcher at RadboudumcVerified email at radboudumc.nl
Francesco AmbrosettiPrincipal Statistician - Novartis, BaselVerified email at novartis.com
Alexandre M.J.J. BonvinUtrecht universityVerified email at uu.nl
Cunliang GengNetherlands eScience CenterVerified email at esciencecenter.nl
Peter A.C. 't HoenProfessor Bioinformatics, Centre for Molecular and Biomolecular Informatics, Radboudumc NijmegenVerified email at radboudumc.nl
Derek van TilborgEindhoven University of TechnologyVerified email at tue.nl
Dani BodorNetherlands eScience CenterVerified email at esciencecenter.nl
Erik J BekkersUniversity of AmsterdamVerified email at uva.nl
Sonja I. Buschowprincipal investigatorVerified email at ncmls.ru.nl

Dario F. Marzella

Medical BioSciences department, Radboudumc

Verified email at radboudumc.nl


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DeepRank: a deep learning framework for data mining 3D protein-protein interfaces N Renaud, C Geng, S Georgievska, F Ambrosetti, L Ridder, DF Marzella, ... Nature communications 12 (1), 7068, 2021	73	2021
PANDORA: a fast, anchor-restrained modelling protocol for peptide: MHC complexes DF Marzella, FM Parizi, D Tilborg, N Renaud, D Sybrandi, R Buzatu, ... Frontiers in Immunology 13, 878762, 2022	18*	2022
PANDORA v2. 0: Benchmarking peptide-MHC II models and software improvements FM Parizi, DF Marzella, G Ramakrishnan, PAC ‘t Hoen, MH Karimi-Jafari, ... Frontiers in Immunology 14, 1285899, 2023	3	2023
The PANDORA software for anchor-restrained peptide: MHC modeling DF Marzella, G Crocioni, FM Parizi, LC Xue Computational Vaccine Design, 251-271, 2023	1	2023
Improving generalizability and data efficiency for MHC-I binding peptide predictions through structure-based geometric deep learning L Xue, D Marzella, G Crocioni, T Radusinović, D Lepikhov, H Severin, ...		2024
DeepRank2: Mining 3D Protein Structures with Geometric Deep Learning G Crocioni, DL Bodor, C Baakman, FM Parizi, DT Rademaker, ... Journal of Open Source Software 9 (94), 5983, 2024		2024
Improving generalizability for MHC-I binding peptide predictions through geometric deep learning DF Marzella, G Crocioni, T Radusinović, D Lepikhov, H Severin, DL Bodor, ... bioRxiv, 2023.12. 04.569776, 2023		2023

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