Brett G. Olivier
TitleCited byYear
Web-based kinetic modelling using JWS Online
BG Olivier, JL Snoep
Bioinformatics 20 (13), 2143-2144, 2004
3292004
Modelling cellular systems with PySCeS
BG Olivier, JM Rohwer, JHS Hofmeyr
Bioinformatics 21 (4), 560-561, 2005
1932005
Towards building the silicon cell: a modular approach
JL Snoep, F Bruggeman, BG Olivier, HV Westerhoff
Biosystems 83 (2-3), 207-216, 2006
1512006
The Systems Biology Markup Language (SBML): language specification for level 3 version 1 core
M Hucka, FT Bergmann, S Hoops, SM Keating, S Sahle, JC Schaff, ...
Journal of integrative bioinformatics 12 (2), 382-549, 2015
1312015
Community flux balance analysis for microbial consortia at balanced growth
RA Khandelwal, BG Olivier, WFM Röling, B Teusink, FJ Bruggeman
PloS one 8 (5), e64567, 2013
1022013
FAME, the flux analysis and modeling environment
J Boele, BG Olivier, B Teusink
BMC systems biology 6 (1), 8, 2012
842012
Optimal flux spaces of genome-scale stoichiometric models are determined by a few subnetworks
SM Kelk, BG Olivier, L Stougie, FJ Bruggeman
Scientific reports 2, 580, 2012
762012
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project
FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ...
BMC bioinformatics 15 (1), 369, 2014
592014
Systems modeling approaches for microbial community studies: from metagenomics to inference of the community structure
M Hanemaaijer, WFM Röling, BG Olivier, RA Khandelwal, B Teusink, ...
Frontiers in microbiology 6, 213, 2015
452015
StochPy: a comprehensive, user-friendly tool for simulating stochastic biological processes
TR Maarleveld, BG Olivier, FJ Bruggeman
PloS one 8 (11), e79345, 2013
442013
Basic concepts and principles of stoichiometric modeling of metabolic networks
TR Maarleveld, RA Khandelwal, BG Olivier, B Teusink, FJ Bruggeman
Biotechnology journal 8 (9), 997-1008, 2013
402013
The eFramework: an Overview
BG Olivier, JL Snoep
352005
Java Web Simulation (JWS); a web based database of kinetic models
JL Snoep, BG Olivier
Molecular biology reports 29 (1-2), 259-263, 2002
352002
Constraint-based stoichiometric modelling from single organisms to microbial communities
W Gottstein, BG Olivier, FJ Bruggeman, B Teusink
Journal of the Royal Society Interface 13 (124), 20160627, 2016
332016
Enzymes or redox couples? The kinetics of thioredoxin and glutaredoxin reactions in a systems biology context
CS Pillay, JHS Hofmeyr, BG Olivier, JL Snoep, JM Rohwer
Biochemical Journal 417 (1), 269-277, 2008
322008
JWS online cellular systems modelling and microbiology
JL Snoep, BG Olivier
Microbiology 149 (11), 3045-3047, 2003
282003
Modelling cellular processes with Python and Scipy
BG Olivier, JM Rohwer, JHS Hofmeyr
Molecular biology reports 29 (1), 249-254, 2002
232002
Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)
D Waltemath, FT Bergmann, C Chaouiya, T Czauderna, P Gleeson, ...
Standards in genomic sciences 9 (3), 1285, 2014
212014
The systems biology markup language (SBML) level 3 package: Flux balance constraints
BG Olivier, FT Bergmann
Journal of integrative bioinformatics 12 (2), 660-690, 2015
202015
Interplay between constraints, objectives, and optimality for genome-scale stoichiometric models
TR Maarleveld, MT Wortel, BG Olivier, B Teusink, FJ Bruggeman
PLoS computational biology 11 (4), e1004166, 2015
202015
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