Nives Skunca
Nives Skunca
Postdoctoral Fellow, ETH Zürich
Verified email at inf.ethz.ch - Homepage
TitleCited byYear
REVIGO summarizes and visualizes long lists of gene ontology terms
F Supek, M Bošnjak, N Škunca, T Šmuc
PloS one 6 (7), e21800, 2011
19672011
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221, 2013
5682013
The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements
AM Altenhoff, N Škunca, N Glover, CM Train, A Sueki, I Piližota, K Gori, ...
Nucleic acids research 43 (D1), D240-D249, 2014
1552014
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17 (1), 184, 2016
1532016
The what, where, how and why of gene ontology—a primer for bioinformaticians
L du Plessis, N Škunca, C Dessimoz
Briefings in bioinformatics 12 (6), 723-735, 2011
1332011
Inferring horizontal gene transfer
M Ravenhall, N Škunca, F Lassalle, C Dessimoz
PLoS computational biology 11 (5), e1004095, 2015
952015
Quality of computationally inferred gene ontology annotations
N Škunca, A Altenhoff, C Dessimoz
PLoS computational biology 8 (5), e1002533, 2012
922012
A transcriptomic-phylogenomic analysis of the evolutionary relationships of flatworms
B Egger, F Lapraz, B Tomiczek, S Müller, C Dessimoz, J Girstmair, ...
Current Biology 25 (10), 1347-1353, 2015
832015
Translational selection is ubiquitous in prokaryotes
F Supek, N Škunca, J Repar, K Vlahoviček, T Šmuc
PLoS genetics 6 (6), e1001004, 2010
702010
The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease
X Peng, J Alföldi, K Gori, AJ Eisfeld, SR Tyler, J Tisoncik-Go, D Brawand, ...
Nature biotechnology 32 (12), 1250, 2014
582014
Tests results strength and thermophysical properties of aerated concrete block wall samples with the use of polyurethane adhesive
GI Grinfeld, AS Gorshkov, NI Vatin
Advanced Materials Research 941, 786-799, 2014
492014
Erlotinib in the first-line treatment of non-small-cell lung cancer
M D’Arcangelo, F Cappuzzo
Expert review of anticancer therapy 13 (5), 523-533, 2013
33*2013
Phyletic profiling with cliques of orthologs is enhanced by signatures of paralogy relationships
N Škunca, M Bošnjak, A Kriško, P Panov, S Džeroski, T Šmuc, F Supek
PLoS computational biology 9 (1), e1002852, 2013
322013
CAFA and the open world of protein function predictions
C Dessimoz, N Škunca, PD Thomas
Trends in Genetics 29 (11), 609-610, 2013
302013
Polyketide synthase genes and the natural products potential of Dictyostelium discoideum
J Zucko, N Skunca, T Curk, B Zupan, PF Long, J Cullum, RH Kessin, ...
Bioinformatics 23 (19), 2543-2549, 2007
302007
Primer on the gene ontology
P Gaudet, N Škunca, JC Hu, C Dessimoz
The Gene Ontology Handbook, 25-37, 2017
282017
The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations
FB Bastian, MC Chibucos, P Gaudet, M Giglio, GL Holliday, H Huang, ...
Database 2015, 2015
272015
Phylogenetic profiling: how much input data is enough?
N Škunca, C Dessimoz
PloS one 10 (2), e0114701, 2015
172015
The Gene Ontology Handbook
C Dessimoz, N Škunca
Humana Press, 2017
132017
The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases
SIB Swiss Institute of Bioinformatics Members
Nucleic acids research 44 (D1), D27-D37, 2015
132015
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Articles 1–20