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Song Cao
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Year
Comprehensive characterization of cancer driver genes and mutations
MH Bailey, C Tokheim, E Porta-Pardo, S Sengupta, D Bertrand, ...
Cell 173 (2), 371-385. e18, 2018
21322018
Proteogenomics connects somatic mutations to signalling in breast cancer
P Mertins, DR Mani, KV Ruggles, MA Gillette, KR Clauser, P Wang, ...
Nature 534 (7605), 55-62, 2016
15332016
Pathogenic germline variants in 10,389 adult cancers
K Huang, RJ Mashl, Y Wu, DI Ritter, J Wang, C Oh, M Paczkowska, ...
Cell 173 (2), 355-370. e14, 2018
7002018
Driver fusions and their implications in the development and treatment of human cancers
Q Gao, WW Liang, SM Foltz, G Mutharasu, RG Jayasinghe, S Cao, ...
Cell reports 23 (1), 227-238. e3, 2018
4762018
Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma
MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ...
Cell 182 (1), 200-225. e35, 2020
4492020
Integrated proteogenomic characterization of clear cell renal cell carcinoma
DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ...
Cell 179 (4), 964-983. e31, 2019
4392019
Proteogenomic and metabolomic characterization of human glioblastoma
LB Wang*, A Karpova*, MA Gritsenko*, JE Kyle*, S Cao*, Y Li*, ...
Cancer Cell, doi: 10.1016/j.ccell.2021.01.006, 2021
3852021
Proteogenomic characterization of endometrial carcinoma
Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ...
Cell 180 (4), 729-748. e26, 2020
3202020
Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy
K Krug, EJ Jaehnig, S Satpathy, L Blumenberg, A Karpova, M Anurag, ...
Cell 183 (5), 1436-1456, 2020
3062020
Gut DNA viromes of Malawian twins discordant for severe acute malnutrition
A Reyes, LV Blanton, S Cao, G Zhao, M Manary, I Trehan, MI Smith, ...
Proceedings of the National Academy of Sciences 112 (38), 11941-11946, 2015
2902015
RNA-Puzzles: A CASP-like evaluation of RNA three-dimensional structure prediction
JA Cruz, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, S Cao, R Das, ...
RNA, 2012
2872012
Proteogenomic characterization of pancreatic ductal adenocarcinoma
L Cao, C Huang, DC Zhou, Y Hu, TM Lih, SR Savage, K Krug, DJ Clark, ...
Cell 184 (19), 5031-5052. e26, 2021
2672021
Systematic Analysis of Splice-Site-Creating Mutations in Cancer
RG Jayasinghe*, S Cao*, Q Gao, MC Wendl, NS Vo, SM Reynolds, ...
Cell Reports 23 (1), 270-281, 2018
2182018
A proteogenomic portrait of lung squamous cell carcinoma
S Satpathy, K Krug, PMJ Beltran, SR Savage, F Petralia, C Kumar-Sinha, ...
Cell 184 (16), 4348-4371. e40, 2021
1862021
Predicting RNA pseudoknot folding thermodynamics
S Cao, SJ Chen
Nucleic acids research 34 (9), 2634-2652, 2006
1842006
Physics-based de novo prediction of RNA 3D structures
S Cao, SJ Chen
The journal of physical chemistry B 115 (14), 4216-4226, 2011
1732011
Proteogenomic integration reveals therapeutic targets in breast cancer xenografts
K Huang, S Li, P Mertins, S Cao, HP Gunawardena, KV Ruggles, ...
Nature communications 8 (1), 14864, 2017
1512017
Predicting RNA folding thermodynamics with a reduced chain representation model
S Cao, SJ Chen
Rna 11 (12), 1884-1897, 2005
1482005
Conservation of copy number profiles during engraftment and passaging of patient-derived cancer xenografts
XY Woo, J Giordano, A Srivastava, ZM Zhao, MW Lloyd, R de Bruijn, ...
Nature genetics 53 (1), 86-99, 2021
1462021
Rational truncation of an RNA aptamer to prostate-specific membrane antigen using computational structural modeling
WM Rockey, FJ Hernandez, SY Huang, S Cao, CA Howell, GS Thomas, ...
Nucleic acid therapeutics 21 (5), 299-314, 2011
1442011
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Articles 1–20