| Centrifuge: rapid and sensitive classification of metagenomic sequences D Kim, L Song, FP Breitwieser, SL Salzberg Genome research 26 (12), 1721-1729, 2016 | 1152 | 2016 |
| Thousands of exon skipping events differentiate among splicing patterns in sixteen human tissues L Florea, L Song, SL Salzberg F1000Research 2, 2013 | 449 | 2013 |
| Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads L Song, L Florea GigaScience 4 (1), s13742-015-0089-y, 2015 | 444 | 2015 |
| Lighter: fast and memory-efficient sequencing error correction without counting L Song, L Florea, B Langmead Genome biology 15, 1-13, 2014 | 281 | 2014 |
| TRUST4: immune repertoire reconstruction from bulk and single-cell RNA-seq data L Song, D Cohen, Z Ouyang, Y Cao, X Hu, XS Liu Nature methods 18 (6), 627-630, 2021 | 146 | 2021 |
| CLASS: constrained transcript assembly of RNA-seq reads L Song, L Florea BMC bioinformatics 14, 1-8, 2013 | 77 | 2013 |
| CLASS2: accurate and efficient splice variant annotation from RNA-seq reads L Song, S Sabunciyan, L Florea Nucleic acids research 44 (10), e98-e98, 2016 | 71 | 2016 |
| Hybrid assembly with long and short reads improves discovery of gene family expansions JR Miller, P Zhou, J Mudge, J Gurtowski, H Lee, T Ramaraj, BP Walenz, ... BMC genomics 18, 1-12, 2017 | 64 | 2017 |
| Rascaf: improving genome assembly with RNA sequencing data L Song, DS Shankar, L Florea The plant genome 9 (3), plantgenome2016.03.0027, 2016 | 55 | 2016 |
| Fast alignment and preprocessing of chromatin profiles with Chromap H Zhang, L Song, X Wang, H Cheng, C Wang, CA Meyer, T Liu, M Tang, ... Nature communications 12 (1), 6566, 2021 | 46 | 2021 |
| Immune receptor repertoires in pediatric and adult acute myeloid leukemia J Zhang, X Hu, J Wang, AD Sahu, D Cohen, L Song, Z Ouyang, J Fan, ... Genome medicine 11, 1-11, 2019 | 45 | 2019 |
| A multi-sample approach increases the accuracy of transcript assembly L Song, S Sabunciyan, G Yang, L Florea Nature communications 10 (1), 5000, 2019 | 33 | 2019 |
| Thousands of exon skipping events differentiate among splicing patterns in sixteen human tissues. F1000Res 2: 188 L Florea, L Song, SL Salzberg | 30 | 2013 |
| Comprehensive characterizations of immune receptor repertoire in tumors and cancer immunotherapy studies L Song, Z Ouyang, D Cohen, Y Cao, J Altreuter, G Bai, X Hu, KJ Livak, ... Cancer immunology research 10 (7), 788-799, 2022 | 11 | 2022 |
| Genomic differences between nasal Staphylococcus aureus from hog slaughterhouse workers and their communities Y You, L Song, BAS Nonyane, LB Price, EK Silbergeld PloS one 13 (3), e0193820, 2018 | 7 | 2018 |
| Efficient and accurate KIR and HLA genotyping with massively parallel sequencing data L Song, G Bai, XS Liu, B Li, H Li Genome Research 33 (6), 923-931, 2023 | 6 | 2023 |
| Tutorial: integrative computational analysis of bulk RNA-sequencing data to characterize tumor immunity using RIMA L Yang, J Wang, J Altreuter, A Jhaveri, CJ Wong, L Song, J Fu, L Taing, ... Nature Protocols 18 (8), 2404-2414, 2023 | 4 | 2023 |
| T1K: efficient and accurate KIR and HLA genotyping with next-generation sequencing data L Song, G Bai, XS Liu, B Li, H Li bioRxiv, 2022.10. 26.513955, 2022 | 3 | 2022 |
| Full resolution HLA and KIR genes annotation for human genome assemblies Y Zhou, L Song, H Li bioRxiv, 2024.01. 20.576452, 2024 | 1 | 2024 |
| Cd70 Deficiency Impairs CD4+ and CD8+ T-Cell Immune Surveillance in Bcl6-Driven Diffuse Large B-Cell Lymphomas E Mandato, E Calabretta, G Bai, L Song, T Ma, V Shanmugam, ... Blood 142, 1624, 2023 | 1 | 2023 |
Liliana FloreaAssociate Professor, Johns Hopkins School of MedicineVerified email at jhu.edu
