Sergey Shmakov
Sergey Shmakov
Verified email at nih.gov
Title
Cited by
Cited by
Year
C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector
OO Abudayyeh, JS Gootenberg, S Konermann, J Joung, IM Slaymaker, ...
Science 353 (6299), 2016
11082016
Discovery and functional characterization of diverse class 2 CRISPR-Cas systems
S Shmakov, OO Abudayyeh, KS Makarova, YI Wolf, JS Gootenberg, ...
Molecular cell 60 (3), 385-397, 2015
8052015
Diversity and evolution of class 2 CRISPR–Cas systems
S Shmakov, A Smargon, D Scott, D Cox, N Pyzocha, W Yan, ...
Nature reviews microbiology 15 (3), 169-182, 2017
5882017
Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants
KS Makarova, YI Wolf, J Iranzo, SA Shmakov, OS Alkhnbashi, SJJ Brouns, ...
Nature Reviews Microbiology 18 (2), 67-83, 2020
4522020
Cas13b is a type VI-B CRISPR-associated RNA-guided RNase differentially regulated by accessory proteins Csx27 and Csx28
AA Smargon, DBT Cox, NK Pyzocha, K Zheng, IM Slaymaker, ...
Molecular cell 65 (4), 618-630. e7, 2017
3332017
The CRISPR spacer space is dominated by sequences from species-specific mobilomes
SA Shmakov, V Sitnik, KS Makarova, YI Wolf, KV Severinov, EV Koonin
MBio 8 (5), e01397-17, 2017
1122017
Recruitment of CRISPR-Cas systems by Tn7-like transposons
JE Peters, KS Makarova, S Shmakov, EV Koonin
Proceedings of the National Academy of Sciences 114 (35), E7358-E7366, 2017
1082017
CRISPR–Cas in mobile genetic elements: counter-defence and beyond
G Faure, SA Shmakov, WX Yan, DR Cheng, DA Scott, JE Peters, ...
Nature Reviews Microbiology 17 (8), 513-525, 2019
892019
Systematic prediction of genes functionally linked to CRISPR-Cas systems by gene neighborhood analysis
SA Shmakov, KS Makarova, YI Wolf, KV Severinov, EV Koonin
Proceedings of the National Academy of Sciences 115 (23), E5307-E5316, 2018
792018
Pervasive generation of oppositely oriented spacers during CRISPR adaptation
S Shmakov, E Savitskaya, E Semenova, MD Logacheva, KA Datsenko, ...
Nucleic acids research 42 (9), 5907-5916, 2014
782014
Metagenomic analysis of bacterial communities of Antarctic surface snow
A Lopatina, S Medvedeva, S Shmakov, MD Logacheva, V Krylenkov, ...
Frontiers in microbiology 7, 398, 2016
522016
Phylogenomics of Cas4 family nucleases
S Hudaiberdiev, S Shmakov, YI Wolf, MP Terns, KS Makarova, EV Koonin
BMC evolutionary biology 17 (1), 1-14, 2017
392017
Altered stoichiometry Escherichia coli Cascade complexes with shortened CRISPR RNA spacers are capable of interference and primed adaptation
K Kuznedelov, V Mekler, S Lemak, M Tokmina-Lukaszewska, ...
Nucleic acids research, gkw914, 2016
392016
On the origin of reverse transcriptase-using CRISPR-Cas systems and their hyperdiverse, enigmatic spacer repertoires
S Silas, KS Makarova, S Shmakov, D Páez-Espino, G Mohr, Y Liu, ...
MBio 8 (4), e00897-17, 2017
342017
Recent mobility of casposons, self-synthesizing transposons at the origin of the CRISPR-Cas immunity
M Krupovic, S Shmakov, KS Makarova, P Forterre, EV Koonin
Genome biology and evolution 8 (2), 375-386, 2016
342016
Dynamics of Escherichia coli type I‐E CRISPR spacers over 42 000 years
E Savitskaya, A Lopatina, S Medvedeva, M Kapustin, S Shmakov, ...
Molecular ecology 26 (7), 2019-2026, 2017
192017
Comparative genomics and evolution of trans-activating RNAs in Class 2 CRISPR-Cas systems
G Faure, SA Shmakov, KS Makarova, YI Wolf, AB Crawley, R Barrangou, ...
RNA biology 16 (4), 435-448, 2019
182019
Novel CRISPR enzymes and systems
K Severinov, F Zhang, YI Wolf, S Shmakov, E Semenova, L Minakhin, ...
US Patent App. 15/482,603, 2017
182017
Machine-learning approach expands the repertoire of anti-CRISPR protein families
AB Gussow, AE Park, AL Borges, SA Shmakov, KS Makarova, YI Wolf, ...
Nature communications 11 (1), 1-12, 2020
172020
Mapping CRISPR spaceromes reveals vast host-specific viromes of prokaryotes
SA Shmakov, YI Wolf, E Savitskaya, KV Severinov, EV Koonin
Communications biology 3 (1), 1-9, 2020
132020
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