Anne Kupczok

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Citations	738	532
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i10-index	20	15

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Tal DaganProfessor of Microbiology, Christian-Albrechts University of KielVerified email at ifam.uni-kiel.de
Arndt von HaeselerMax Perutz Labs University of Vienna, Medical University of ViennaVerified email at univie.ac.at
Nicole DubilierMax Planck Institute for Marine Microbiology; MARUM, University of BremenVerified email at mpi-bremen.de
Jillian M. PetersenAssociate Professor, University of ViennaVerified email at mpi-bremen.de
Rebecca AnsorgeQuadram Institute BioscienceVerified email at quadram.ac.uk
Jonathan P. BollbackInstitute of Integrative Biology, University of LiverpoolVerified email at liverpool.ac.uk
Giddy LandanChristian-Albrechts-University KielVerified email at ifam.uni-kiel.de
Ingo EbersbergerProfessor for Applied Bioinformatics, Goethe University FrankfurtVerified email at bio.uni-frankfurt.de
Ricardo De Matos SimoesDana Farber Cancer InstituteVerified email at dfci.harvard.edu
Heiko A. SchmidtCenter for Integrative Bioinformatics Vienna (CIBIV)Verified email at univie.ac.at
Steffen KlaereEconomical Insurance, Waterloo, CanadaVerified email at auckland.ac.nz
Rolf BackofenProfessor für Bioinformatik, Universität FreiburgVerified email at informatik.uni-freiburg.de
Omer S. AlkhnbashiBioinformatics Group Department of Computer Science Albert-Ludwigs-University Freiburg GeorgesVerified email at informatik.uni-freiburg.de
Katrin HammerschmidtInstitute of Microbiology, Christian-Albrechts-University Kiel, GermanyVerified email at ifam.uni-kiel.de
Karina StuckenUniversidad de La SerenaVerified email at userena.cl
Peter DittrichFriedrich Schiller University JenaVerified email at minet.uni-jena.de
Rodrigo RedondoInstitute of Science and Technology - AustriaVerified email at ist.ac.at
Paul JenningsVrije Universiteit AmsterdamVerified email at vu.nl
Univ. Prof. Dr. med. Walter Pfallermedical university of Innsbruck/AustriaVerified email at i-med.ac.at

Anne Kupczok

Bioinformatics Group, Wageningen University & Research

Verified email at wur.nl - Homepage

Bioinformatics Microbiology


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A consistent phylogenetic backbone for the fungi I Ebersberger, R de Matos Simoes, A Kupczok, M Gube, E Kothe, K Voigt, ... Molecular biology and evolution 29 (5), 1319-1334, 2012	135	2012
Accuracy of phylogeny reconstruction methods combining overlapping gene data sets A Kupczok, HA Schmidt, A Von Haeseler Algorithms for Molecular Biology 5 (1), 1-17, 2010	74	2010
Functional diversity enables multiple symbiont strains to coexist in deep-sea mussels R Ansorge, S Romano, L Sayavedra, MÁG Porras, A Kupczok, ... Nature microbiology 4 (12), 2487-2497, 2019	66*	2019
A phage protein aids bacterial symbionts in eukaryote immune evasion MT Jahn, K Arkhipova, SM Markert, C Stigloher, T Lachnit, L Pita, ... Cell Host & Microbe 26 (4), 542-550. e5, 2019	59	2019
Rates of Mutation and Recombination in Siphoviridae Phage Genome Evolution over Three Decades A Kupczok, H Neve, KD Huang, MP Hoeppner, KJ Heller, CMAP Franz, ... Molecular Biology and Evolution 35 (5), 1147-1159, 2018	44	2018
Segregational drift and the interplay between plasmid copy number and evolvability J Ilhan, A Kupczok, C Woehle, T Wein, NF Hülter, P Rosenstiel, G Landan, ... Molecular biology and evolution 36 (3), 472-486, 2019	37	2019
The contribution of genetic recombination to CRISPR array evolution A Kupczok, G Landan, T Dagan Genome biology and evolution 7 (7), 1925-1939, 2015	36	2015
Horizontally transmitted symbiont populations in deep-sea mussels are genetically isolated DR Picazo, T Dagan, R Ansorge, JM Petersen, N Dubilier, A Kupczok The ISME Journal 13, 2954–2968, 2019	30	2019
An exact algorithm for the geodesic distance between phylogenetic trees A Kupczok, AV Haeseler, S Klaere Journal of Computational Biology 15 (6), 577-591, 2008	26	2008
Methanosarcina spherical virus, a novel archaeal lytic virus targeting methanosarcina strains K Weidenbach, L Nickel, H Neve, OS Alkhnbashi, S Künzel, A Kupczok, ... Journal of virology 91 (22), e00955-17, 2017	23	2017
Marine genomics: News and views ÂM Ribeiro, AD Foote, A Kupczok, B Frazão, MT Limborg, R Piñeiro, ... Marine genomics 31, 1-8, 2017	22	2017
Plasticity first: molecular signatures of a complex morphological trait in filamentous cyanobacteria R Koch, A Kupczok, K Stucken, J Ilhan, K Hammerschmidt, T Dagan BMC evolutionary biology 17 (1), 1-11, 2017	20	2017
Recombination Signal in Mycobacterium tuberculosis Stems from Reference-guided Assemblies and Alignment Artefacts M Godfroid, T Dagan, A Kupczok Genome biology and evolution 10 (8), 1920-1926, 2018	18	2018
Probabilistic models for CRISPR spacer content evolution A Kupczok, JP Bollback BMC evolutionary biology 13 (1), 1-18, 2013	18	2013
Split-based computation of majority-rule supertrees A Kupczok BMC evolutionary biology 11 (1), 1-13, 2011	18	2011
Determinants of simulated RNA evolution A Kupczok, P Dittrich Journal of theoretical biology 238 (3), 726-735, 2006	16	2006
Complete genome sequence of the novel phage MG-B1 infecting Bacillus weihenstephanensis RAF Redondo, A Kupczok, G Stift, JP Bollback Genome announcements 1 (3), e00216-13, 2013	15	2013
Insertion and deletion evolution reflects antibiotics selection pressure in a Mycobacterium tuberculosis outbreak M Godfroid, T Dagan, M Merker, TA Kohl, R Diel, FP Maurer, S Niemann, ... PLoS Pathogens 16 (9), e1008357, 2020	11	2020
A SAGE based approach to human glomerular endothelium: defining the transcriptome, finding a novel molecule and highlighting endothelial diversity G Sengoelge, W Winnicki, A Kupczok, A von Haeseler, M Schuster, ... BMC genomics 15 (1), 1-16, 2014	11	2014
Motif depletion in bacteriophages infecting hosts with CRISPR systems A Kupczok, JP Bollback BMC genomics 15 (1), 1-14, 2014	10	2014

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