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Fiona Brinkman
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Year
Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen
CK Stover, XQ Pham, AL Erwin, SD Mizoguchi, P Warrener, MJ Hickey, ...
Nature 406 (6799), 959-964, 2000
56802000
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database
BP Alcock, AR Raphenya, TTY Lau, KK Tsang, M Bouchard, ...
Nucleic acids research 48 (D1), D517-D525, 2020
28422020
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
NY Yu, JR Wagner, MR Laird, G Melli, S Rey, R Lo, P Dao, SC Sahinalp, ...
Bioinformatics 26 (13), 1608-1615, 2010
25952010
CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database
B Jia, AR Raphenya, B Alcock, N Waglechner, P Guo, KK Tsang, BA Lago, ...
Nucleic acids research, gkw1004, 2016
22932016
InnateDB: systems biology of innate immunity and beyond—recent updates and continuing curation
K Breuer, AK Foroushani, MR Laird, C Chen, A Sribnaia, R Lo, GL Winsor, ...
Nucleic acids research 41 (D1), D1228-D1233, 2013
12372013
IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets
C Bertelli, MR Laird, KP Williams, ...
Nucleic acids research 45 (W1), W30-W35, 2017
11792017
The genome sequence of taurine cattle: a window to ruminant biology and evolution
Bovine Genome Sequencing and Analysis Consortium, CG Elsik, ...
Science 324 (5926), 522-528, 2009
11582009
Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database
GL Winsor, EJ Griffiths, R Lo, BK Dhillon, JA Shay, FSL Brinkman
Nucleic acids research 44 (D1), D646-D653, 2016
10782016
PSORTb v. 2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis
JL Gardy, MR Laird, F Chen, S Rey, CJ Walsh, M Ester, FSL Brinkman
Bioinformatics 21 (5), 617-623, 2005
9152005
Whole-genome sequencing and social-network analysis of a tuberculosis outbreak
JL Gardy, JC Johnston, SJH Sui, VJ Cook, L Shah, E Brodkin, S Rempel, ...
New England Journal of Medicine 364 (8), 730-739, 2011
9112011
The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse
MP McLeod, RL Warren, WWL Hsiao, N Araki, M Myhre, C Fernandes, ...
Proceedings of the National Academy of Sciences 103 (42), 15582-15587, 2006
8002006
Modulation of the TLR-mediated inflammatory response by the endogenous human host defense peptide LL-37
N Mookherjee, KL Brown, DME Bowdish, S Doria, R Falsafi, K Hokamp, ...
The Journal of Immunology 176 (4), 2455-2464, 2006
7252006
Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes
GL Winsor, DKW Lam, L Fleming, R Lo, MD Whiteside, NY Yu, ...
Nucleic acids research 39 (suppl_1), D596-D600, 2010
7042010
CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database
BP Alcock, W Huynh, R Chalil, KW Smith, AR Raphenya, MA Wlodarski, ...
Nucleic acids research 51 (D1), D690-D699, 2023
5992023
Protein interaction data curation: the International Molecular Exchange (IMEx) consortium
S Orchard, S Kerrien, S Abbani, B Aranda, J Bhate, S Bidwell, A Bridge, ...
Nature methods 9 (4), 345-350, 2012
5812012
PSORT-B: Improving protein subcellular localization prediction for Gram-negative bacteria
JL Gardy, C Spencer, K Wang, M Ester, GE Tusnady, I Simon, S Hua, ...
Nucleic acids research 31 (13), 3613-3617, 2003
5502003
Function of Pseudomonas Porins in Uptake and Efflux
REW Hancock, FSL Brinkman
Annual Reviews in Microbiology 56 (1), 17-38, 2002
4842002
IslandViewer: an integrated interface for computational identification and visualization of genomic islands
MGI Langille, FSL Brinkman
Bioinformatics 25 (5), 664-665, 2009
4662009
IslandPath: aiding detection of genomic islands in prokaryotes
W Hsiao, I Wan, SJ Jones, FSL Brinkman
Bioinformatics 19 (3), 418-420, 2003
4242003
InnateDB: facilitating systems‐level analyses of the mammalian innate immune response
DJ Lynn, GL Winsor, C Chan, N Richard, MR Laird, A Barsky, JL Gardy, ...
Molecular systems biology 4 (1), 218, 2008
4212008
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