|Convergent loss of PTEN leads to clinical resistance to a PI (3) Kα inhibitor|
D Juric, P Castel, M Griffith, OL Griffith, HH Won, H Ellis, SH Ebbesen, ...
Nature 518 (7538), 240, 2015
|DGIdb 2.0: mining clinically relevant drug–gene interactions|
AH Wagner, AC Coffman, BJ Ainscough, NC Spies, ZL Skidmore, ...
Nucleic acids research 44 (D1), D1036-D1044, 2015
|CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer|
M Griffith, NC Spies, K Krysiak, JF McMichael, AC Coffman, AM Danos, ...
Nature genetics 49 (2), 170, 2017
|High-performance web services for querying gene and variant annotation|
J Xin, A Mark, C Afrasiabi, G Tsueng, M Juchler, N Gopal, GS Stupp, ...
Genome biology 17 (1), 91, 2016
|Genome-wide association study of CSF levels of 59 Alzheimer's disease candidate proteins: significant associations with proteins involved in amyloid processing and inflammation|
JSK Kauwe, MH Bailey, PG Ridge, R Perry, ME Wadsworth, KL Hoyt, ...
PLoS genetics 10 (10), e1004758, 2014
|Genome modeling system: a knowledge management platform for genomics|
M Griffith, OL Griffith, SM Smith, A Ramu, MB Callaway, AM Brummett, ...
PLoS computational biology 11 (7), e1004274, 2015
|Informatics for RNA sequencing: a web resource for analysis on the cloud|
M Griffith, JR Walker, NC Spies, BJ Ainscough, OL Griffith
PLoS computational biology 11 (8), e1004393, 2015
|Organizing knowledge to enable personalization of medicine in cancer|
BM Good, BJ Ainscough, JF McMichael, AI Su, OL Griffith
Genome biology 15 (8), 438, 2014
|Phosphorylated tau-Aβ42 ratio as a continuous trait for biomarker discovery for early-stage Alzheimer’s disease in multiplex immunoassay panels of cerebrospinal fluid|
O Harari, C Cruchaga, JSK Kauwe, BJ Ainscough, K Bales, EH Pickering, ...
Biological psychiatry 75 (9), 723-731, 2014
|DoCM: a database of curated mutations in cancer|
BJ Ainscough, M Griffith, AC Coffman, AH Wagner, J Kunisaki, ...
Nature methods 13 (10), 806, 2016
|Comprehensive genomic analysis reveals FLT3 activation and a therapeutic strategy for a patient with relapsed adult B-lymphoblastic leukemia|
M Griffith, OL Griffith, K Krysiak, ZL Skidmore, MJ Christopher, JM Klco, ...
Experimental hematology 44 (7), 603-613, 2016
|Molecular phylogenetics of the burrowing crayfish genus Fallicambarus (Decapoda: Cambaridae)|
BJ Ainscough, JW Breinholt, HW Robison, KA Crandall
Zoologica Scripta 42 (3), 306-316, 2013
|The prognostic effects of somatic mutations in ER-positive breast cancer|
OL Griffith, NC Spies, M Anurag, M Griffith, J Luo, D Tu, B Yeo, J Kunisaki, ...
Nature communications 9 (1), 3476, 2018
|A deep learning approach to automate refinement of somatic variant calling from cancer sequencing data|
BJ Ainscough, EK Barnell, P Ronning, KM Campbell, AH Wagner, ...
Nature genetics 50 (12), 1735, 2018
|Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples|
EK Barnell, P Ronning, KM Campbell, K Krysiak, BJ Ainscough, LM Sheta, ...
Genetics in Medicine 21 (4), 972, 2019
|CIViC: A knowledgebase for expert-crowdsourcing the clinical interpretation of variants in cancer.|
M Griffith, NC Spies, K Krysiak, AC Coffman, JF McMichael, BJ Ainscough, ...
BioRxiv, 072892, 2016
|Standard operating procedure for somatic variant refinement of tumor sequencing data|
EK Barnell, P Ronning, KM Campbell, K Krysiak, BJ Ainscough, ...
BioRxiv, 266262, 2018
|MyGene. info and MyVariant. info: gene and variant annotation query services|
J Xin, A Mark, C Afrasiabi, G Tsueng, M Juchler, N Gopal, G Stupp, ...
bioRxiv, 035667, 2015
|33. Aggregating evidence to determine the clinical significance of cancer variants in the CIViC knowledgebase|
K Krysiak, A Danos, A Wagner, J McMichael, S Kiwala, A Coffman, ...
Cancer Genetics 233, S14, 2019
|Solving The Interpretation Bottleneck for Cancer Precision Medicine|
OL Griffith, K Krysiak, A Danos, E Barnell, N Spies, B Ainscough, L Kujan, ...
Pathology 51, S34, 2019