Maria Suarez-Diez
Maria Suarez-Diez
Systems and Synthetic Biology Wageningen UR
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TitleCited byYear
Understanding the antimicrobial mechanism of TiO2-based nanocomposite films in a pathogenic bacterium
A Kubacka, MS Diez, D Rojo, R Bargiela, S Ciordia, I Zapico, JP Albar, ...
Scientific reports 4, 4134, 2014
Degenerate target sites mediate rapid primed CRISPR adaptation
PC Fineran, MJH Gerritzen, M Suárez-Diez, T Künne, J Boekhorst, ...
Proceedings of the National Academy of Sciences 111 (16), E1629-E1638, 2014
Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system
R Vilchez‐Vargas, R Geffers, M Suárez‐Diez, I Conte, A Waliczek, ...
Environmental microbiology 15 (4), 1016-1039, 2013
Functional consequences of microbial shifts in the human gastrointestinal tract linked to antibiotic treatment and obesity
E Hernández, R Bargiela, M Suárez Diez, A Friedrichs, AE Pérez-Cobas, ...
Gut Microbes 4 (4), 306-315, 2013
Cas3-derived target DNA degradation fragments fuel primed CRISPR adaptation
T Künne, SN Kieper, JW Bannenberg, AIM Vogel, WR Miellet, M Klein, ...
Molecular cell 63 (5), 852-864, 2016
Challenges in the computational design of proteins
M Suarez, A Jaramillo
J R Soc Interface 6 (Suppl 4), S477-S491, 2009
Transcriptional response of the photoheterotrophic marine bacterium Dinoroseobacter shibae to changing light regimes
J Tomasch, R Gohl, B Bunk, M Suarez Diez, I Wagner-Döbler
The ISME journal 5 (12), 1957-1968, 2011
Microbial stratification in low pH oxic and suboxic macroscopic growths along an acid mine drainage
C Méndez-García, V Mesa, RR Sprenger, M Richter, M Suarez Diez, ...
The ISME journal 8 (6), 1259-1274, 2014
Comprehensive insights into transcriptional adaptation of intracellular mycobacteria by microbe-enriched dual RNA sequencing
RA Rienksma, M Suarez-Diez, HJ Mollenkopf, GM Dolganov, A Dorhoi, ...
BMC genomics 16 (1), 34, 2015
Geochemical and microbial community determinants of reductive dechlorination at a site biostimulated with glycerol
S Atashgahi, Y Lu, Y Zheng, E Saccenti, M Suarez‐Diez, J Ramiro‐Garcia, ...
Environmental microbiology 19 (3), 968-981, 2017
Systems-level modeling of mycobacterial metabolism for the identification of new (multi-) drug targets
RA Rienksma, M Suarez-Diez, L Spina, PJ Schaap, VAPM dos Santos
Seminars in immunology 26 (6), 610-622, 2014
From the environment to the host: re-wiring of the transcriptome of Pseudomonas aeruginosa from 22 C to 37 C
M Barbier, FH Damron, P Bielecki, M Suárez-Diez, J Puchałka, S Albertí, ...
PLoS One 9 (2), e89941, 2014
Genome-scale model and omics analysis of metabolic capacities of Akkermansia muciniphila reveal a preferential mucin-degrading lifestyle
N Ottman, M Davids, M Suarez-Diez, S Boeren, PJ Schaap, ...
Appl. Environ. Microbiol. 83 (18), e01014-17, 2017
Probabilistic networks of blood metabolites in healthy subjects as indicators of latent cardiovascular risk
E Saccenti, M Suarez-Diez, C Luchinat, C Santucci, L Tenori
Journal of proteome research 14 (2), 1101-1111, 2014
Using multi-objective computational design to extend protein promiscuity
M Suarez, P Tortosa, MM Garcıa-Mira, D Rodrıguez-Larrea, ...
Biophysical Chemistry 147 (1-2), 13-19, 2010
Pareto optimization in computational protein design with multiple objectives
M Suarez, P Tortosa, J Carrera, A Jaramillo
Journal of computational chemistry 29 (6), 2704-2711, 2008
Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data
JJ Koehorst, JCJ Van Dam, RGA Van Heck, E Saccenti, ...
Scientific reports 6, 38699, 2016
Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics
JJ Koehorst, E Saccenti, PJ Schaap, VAPM dos Santos, M Suarez-Diez
F1000Research 5, 2016
Integration of heterogeneous molecular networks to unravel gene-regulation in Mycobacterium tuberculosis
JC van Dam, P Schaap, VAP Martins dos Santos, M Suarez-Diez
BMC Systems Biology 8 (111), 2014
Plasma and serum metabolite association networks: Comparability within and between studies using NMR and MS profiling
M Suarez-Diez, J Adam, J Adamski, SA Chasapi, C Luchinat, A Peters, ...
Journal of proteome research 16 (7), 2547-2559, 2017
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