Nikolay Shirokikh
Nikolay Shirokikh
Researcher, The John Curtin School of Medical Research, Austarlian National University
Verified email at anu.edu.au
TitleCited byYear
Dissociation of eIF1 from the 40S ribosomal subunit is a key step in start codon selection in vivo
YN Cheung, D Maag, SF Mitchell, CA Fekete, MA Algire, JE Takacs, ...
Genes & development 21 (10), 1217-1230, 2007
1692007
Translation initiation by factor-independent binding of eukaryotic ribosomes to internal ribosomal entry sites
AV Pisarev, NE Shirokikh, CUT Hellen
Comptes rendus biologies 328 (7), 589-605, 2005
1442005
The fidelity of translation initiation: reciprocal activities of eIF1, IF3 and YciH
IB Lomakin, NE Shirokikh, MM Yusupov, CUT Hellen, TV Pestova
The EMBO journal 25 (1), 196-210, 2006
1102006
The eIF1A C‐terminal domain promotes initiation complex assembly, scanning and AUG selection in vivo
CA Fekete, DJ Applefield, SA Blakely, N Shirokikh, T Pestova, JR Lorsch, ...
The EMBO journal 24 (20), 3588-3601, 2005
1002005
Dynamics of ribosome scanning and recycling revealed by translation complex profiling
SK Archer, NE Shirokikh, TH Beilharz, T Preiss
Nature 535 (7613), 570, 2016
722016
Poly (A) leader of eukaryotic mRNA bypasses the dependence of translation on initiation factors
NE Shirokikh, AS Spirin
Proceedings of the National Academy of Sciences 105 (31), 10738-10743, 2008
632008
Probing the closed-loop model of mRNA translation in living cells
SK Archer, NE Shirokikh, CV Hallwirth, TH Beilharz, T Preiss
RNA biology 12 (3), 248-254, 2015
342015
Translation initiation by cap‐dependent ribosome recruitment: Recent insights and open questions
NE Shirokikh, T Preiss
Wiley Interdisciplinary Reviews: RNA 9 (4), e1473, 2018
262018
Quantitative analysis of ribosome–mRNA complexes at different translation stages
NE Shirokikh, EZ Alkalaeva, KS Vassilenko, ZA Afonina, OM Alekhina, ...
Nucleic acids research 38 (3), e15-e15, 2009
262009
Translation complex profile sequencing to study the in vivo dynamics of mRNA–ribosome interactions during translation initiation, elongation and termination
NE Shirokikh, SK Archer, TH Beilharz, D Powell, T Preiss
nature protocols 12 (4), 697, 2017
192017
Insight into the structural organization of the omega leader of TMV RNA: the role of various regions of the sequence in the formation of a compact structure of the omega RNA
SC Agalarov, EA Sogorin, NE Shirokikh, AS Spirin
Biochemical and biophysical research communications 404 (1), 250-253, 2011
172011
The leader sequence of tobacco mosaic virus RNA devoid of Watson–Crick secondary structure possesses a cooperatively melted, compact conformation
AA Kovtun, NE Shirokikh, AT Gudkov, AS Spirin
Biochemical and biophysical research communications 358 (1), 368-372, 2007
152007
Chemical and enzymatic probing of spatial structure of the omega leader of tobacco mosaic virus RNA
NE Shirokikh, SC Agalarov, AS Spirin
Biochemistry (Moscow) 75 (4), 405-411, 2010
132010
Selective and flexible depletion of problematic sequences from RNA-seq libraries at the cDNA stage
SK Archer, NE Shirokikh, T Preiss
BMC genomics 15 (1), 401, 2014
122014
Insights into the biogenesis and potential functions of exonic circular RNA
C Ragan, GJ Goodall, NE Shirokikh, T Preiss
Scientific reports 9 (1), 2048, 2019
102019
Probe‐Directed Degradation (PDD) for Flexible Removal of Unwanted cDNA Sequences from RNA‐Seq Libraries
SK Archer, NE Shirokikh, T Preiss
Current protocols in human genetics 85 (1), 11.15. 1-11.15. 36, 2015
42015
Leader sequences of eukaryotic mRNA can be simultaneously bound to initiating 80S ribosome and 40S ribosomal subunit
EA Sogorin, NE Shirokikh, AM Ibragimova, VD Vasiliev, SC Agalarov, ...
Biochemistry (Moscow) 77 (4), 342-345, 2012
32012
Migration of Small Ribosomal Subunits on the 5′ Untranslated Regions of Capped Messenger RNA
NE Shirokikh, YS Dutikova, MA Staroverova, RD Hannan, T Preiss
International journal of molecular sciences 20 (18), 4464, 2019
12019
Control of Translation at the Initiation Phase During Glucose Starvation in Yeast
Y Janapala, T Preiss, NE Shirokikh
International journal of molecular sciences 20 (16), 4043, 2019
12019
Selective Translation Complex Profiling Reveals Staged Initiation and Co-translational Assembly of Initiation Factor Complexes
S Wagner, A Herrmannová, V Hronová, N Sen, RD Hannan, ...
bioRxiv, 806125, 2019
2019
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Articles 1–20